Variant report

Variant	rs1779240
Chromosome Location	chr10:18476313-18476314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12413195	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12777936	0.95[ASN][1000 genomes]
rs16916928	0.95[ASN][1000 genomes]
rs1757205	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1757206	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1757207	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1757210	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1757211	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779226	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779227	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779228	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779235	0.89[ASN][1000 genomes]
rs1779238	0.82[EUR][1000 genomes]
rs7067916	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18479000	Weak transcription	Right Ventricle	heart
5	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:18469600-18483200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:18469800-18479200	Weak transcription	Left Ventricle	heart
9	chr10:18470200-18484000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:18470200-18484400	Weak transcription	Right Atrium	heart
11	chr10:18471200-18483000	Weak transcription	Fetal Stomach	stomach
12	chr10:18471400-18483600	Weak transcription	Fetal Lung	lung
13	chr10:18471600-18481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:18473600-18477400	Enhancers	Ovary	ovary
15	chr10:18474800-18478600	Weak transcription	Fetal Heart	heart
16	chr10:18475000-18481000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:18475200-18479000	Weak transcription	Pancreas	Pancrea
18	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:18475400-18479800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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