Variant report

Variant	rs12786204
Chromosome Location	chr11:94373774-94373775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:94373434-94373774	K562	blood:	n/a	n/a
2	POLR2A	chr11:94372839-94373824	HCT-116	colon:	n/a	n/a
3	ELF1	chr11:94372770-94373819	HCT-116	colon:	n/a	n/a
4	ZNF143	chr11:94373549-94373829	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIWIL4-1	chr11:94373749-94373999	ENSG00000233536

Variant related genes	Relation type
ENSG00000255666	TF binding region

rs_ID	r²[population]
rs11823553	1.00[AMR][1000 genomes]
rs12278340	1.00[EUR][1000 genomes]
rs12279797	1.00[EUR][1000 genomes]
rs12291566	1.00[EUR][1000 genomes]
rs12294457	1.00[EUR][1000 genomes]
rs12795268	1.00[AMR][1000 genomes]
rs12799237	1.00[EUR][1000 genomes]
rs12804546	1.00[AMR][1000 genomes]
rs12808355	1.00[EUR][1000 genomes]
rs34142275	1.00[AMR][1000 genomes]
rs34291601	1.00[AMR][1000 genomes]
rs34492831	1.00[AMR][1000 genomes]
rs34609015	1.00[AMR][1000 genomes]
rs34822734	1.00[AMR][1000 genomes]
rs34840079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34917558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35011724	1.00[EUR][1000 genomes]
rs35164064	1.00[EUR][1000 genomes]
rs35708933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35720344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35873248	1.00[AMR][1000 genomes]
rs71459739	1.00[EUR][1000 genomes]
rs71471202	1.00[AMR][1000 genomes]
rs71473203	1.00[AMR][1000 genomes]
rs71473204	1.00[AMR][1000 genomes]
rs71473208	1.00[AMR][1000 genomes]
rs71479610	1.00[AMR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94368000-94374200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:94368400-94374000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:94368400-94374000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:94370000-94374000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:94370600-94373800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:94370600-94374600	Enhancers	Placenta	Placenta
7	chr11:94371800-94374400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr11:94372200-94374800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:94372200-94374800	Enhancers	Right Atrium	heart
10	chr11:94372600-94374800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:94372800-94374000	Weak transcription	Fetal Thymus	thymus
12	chr11:94372800-94374200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:94372800-94374200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:94372800-94374200	Weak transcription	Brain Angular Gyrus	brain
15	chr11:94372800-94374200	Weak transcription	Brain Anterior Caudate	brain
16	chr11:94372800-94374200	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:94372800-94374200	Weak transcription	HSMM	muscle
18	chr11:94372800-94374400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:94372800-94381200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:94373000-94374200	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr11:94373000-94374200	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:94373000-94374400	Weak transcription	HSMMtube	muscle
23	chr11:94373200-94374000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:94373200-94374000	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr11:94373200-94374000	Active TSS	K562	blood
26	chr11:94373200-94374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:94373200-94374200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:94373200-94374200	Weak transcription	Left Ventricle	heart
29	chr11:94373200-94374200	Weak transcription	Lung	lung
30	chr11:94373200-94374200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:94373200-94374200	Weak transcription	Spleen	Spleen
32	chr11:94373200-94374400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:94373200-94374400	Weak transcription	Right Ventricle	heart
34	chr11:94373400-94373800	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links