Variant report

Variant	rs12797329
Chromosome Location	chr11:120948832-120948833
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10502246	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12788247	0.90[EUR][1000 genomes]
rs12794296	0.96[EUR][1000 genomes]
rs12797404	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs12803528	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12805477	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17124767	0.93[EUR][1000 genomes]
rs17245789	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17245796	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1939933	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34178922	0.90[EUR][1000 genomes]
rs34505832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35457276	1.00[EUR][1000 genomes]
rs7943043	0.93[EUR][1000 genomes]
rs874069	0.81[CEU][hapmap];0.84[YRI][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046688	chr11:120894391-120956305	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv524651	chr11:120941583-120954769	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120896200-120959600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:120900800-120949800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:120909000-120956400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:120910000-120966600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:120911200-120957400	Weak transcription	Thymus	Thymus
6	chr11:120911200-120961200	Weak transcription	Spleen	Spleen
7	chr11:120915400-120950200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:120925200-120957400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:120925200-120960000	Weak transcription	Right Ventricle	heart
10	chr11:120925200-120962400	Weak transcription	Psoas Muscle	Psoas
11	chr11:120925400-120953400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:120926000-120949400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:120926000-120956600	Weak transcription	NHLF	lung
14	chr11:120926200-120950200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:120926200-120966200	Weak transcription	NHEK	skin
16	chr11:120926400-120965800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:120927000-120949800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:120927600-120956600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:120927600-120956800	Weak transcription	HMEC	breast
20	chr11:120927600-120959400	Weak transcription	Fetal Brain Male	brain
21	chr11:120928400-120957000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:120933200-120957800	Weak transcription	Placenta	Placenta
23	chr11:120933400-120956200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:120933600-120959600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:120934200-120957400	Weak transcription	Osteobl	bone
26	chr11:120934600-120950200	Weak transcription	Dnd41	blood
27	chr11:120935600-120961000	Weak transcription	NHDF-Ad	bronchial
28	chr11:120936200-120957200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:120937200-120956400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:120937400-120961600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:120938600-120957200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:120939000-120953200	Weak transcription	A549	lung
33	chr11:120939000-120954400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:120939400-120950000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:120939400-120957600	Weak transcription	Fetal Stomach	stomach
36	chr11:120939800-120957800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:120939800-120962600	Weak transcription	Small Intestine	intestine
38	chr11:120940200-120959200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:120940600-120956200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:120940600-120957200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr11:120940600-120957600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:120940600-120960600	Weak transcription	Fetal Intestine Small	intestine
43	chr11:120940800-120956000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:120940800-120957400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr11:120940800-120958000	Weak transcription	Brain Germinal Matrix	brain
46	chr11:120942800-120953000	Weak transcription	HSMM	muscle
47	chr11:120942800-120956200	Weak transcription	HUVEC	blood vessel
48	chr11:120942800-120957400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:120942800-120957600	Weak transcription	Colon Smooth Muscle	Colon
50	chr11:120942800-120957800	Weak transcription	HSMMtube	muscle

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