Variant report

Variant	rs12797404
Chromosome Location	chr11:120927789-120927790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10502246	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788247	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794296	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797329	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs12803528	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805477	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17124767	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245789	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245796	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939933	0.96[EUR][1000 genomes]
rs34178922	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505832	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35457276	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943043	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874069	0.81[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046688	chr11:120894391-120956305	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1039908	chr11:120904893-120936907	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120896000-120938600	Weak transcription	Lung	lung
2	chr11:120896200-120959600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr11:120896600-120938200	Weak transcription	Fetal Stomach	stomach
4	chr11:120898800-120938400	Weak transcription	Aorta	Aorta
5	chr11:120900800-120949800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:120905800-120941600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:120909000-120956400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:120910000-120966600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:120910200-120938200	Weak transcription	Small Intestine	intestine
10	chr11:120910200-120939600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:120911200-120939600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:120911200-120957400	Weak transcription	Thymus	Thymus
13	chr11:120911200-120961200	Weak transcription	Spleen	Spleen
14	chr11:120914000-120948400	Weak transcription	Fetal Heart	heart
15	chr11:120915400-120929400	Strong transcription	Primary hematopoietic stem cells	blood
16	chr11:120915400-120950200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr11:120915600-120931600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:120915600-120941200	Strong transcription	Primary T cells from cord blood	blood
19	chr11:120915800-120935400	Strong transcription	Fetal Lung	lung
20	chr11:120915800-120940000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:120916200-120939400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:120916400-120929200	Strong transcription	Primary B cells from peripheral blood	blood
23	chr11:120916400-120940600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:120916600-120935000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:120916600-120940200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:120916800-120941000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:120916800-120942400	Weak transcription	Esophagus	oesophagus
28	chr11:120918000-120938200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:120918400-120942600	Weak transcription	Gastric	stomach
30	chr11:120919800-120934800	Weak transcription	A549	lung
31	chr11:120919800-120936000	Weak transcription	Fetal Intestine Small	intestine
32	chr11:120920000-120942000	Weak transcription	Stomach Mucosa	stomach
33	chr11:120920400-120942400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:120921400-120930200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:120922000-120929400	Strong transcription	Primary B cells from cord blood	blood
36	chr11:120922000-120929800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:120922200-120927800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr11:120922200-120928600	Strong transcription	Liver	Liver
39	chr11:120922200-120931400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:120922200-120937000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:120922200-120937000	Strong transcription	HSMM	muscle
42	chr11:120922200-120937400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:120922200-120940600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:120922200-120940600	Strong transcription	Adipose Nuclei	Adipose
45	chr11:120922200-120940800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:120922400-120936800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:120922600-120929200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:120922600-120940600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:120922800-120938800	Weak transcription	Colonic Mucosa	Colon
50	chr11:120923600-120933800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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