Variant report

Variant	rs34178922
Chromosome Location	chr11:120970408-120970409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:120970140-120970429	HepG2	liver:	n/a	chr11:120970265-120970275 chr11:120970262-120970276 chr11:120970261-120970277 chr11:120970259-120970279
2	MAFF	chr11:120970204-120970416	HepG2	liver:	n/a	chr11:120970262-120970276 chr11:120970256-120970274
3	MAFK	chr11:120970131-120970442	HepG2	liver:	n/a	chr11:120970265-120970275 chr11:120970262-120970276 chr11:120970261-120970277 chr11:120970259-120970279

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:120970407-120970457	GM06990	blood:	n/a
2	chr11:120970407-120970457	BJ	skin:	n/a
3	chr11:120970407-120970457	AG10803	skin:	n/a
4	chr11:120970407-120970457	NHDF-neo	bronchial:	n/a
5	chr11:120970407-120970457	T-47D	breast:	n/a
6	chr11:120970407-120970457	HNPCEpiC	eye:	n/a
7	chr11:120970407-120970457	Jurkat	blood:	n/a
8	chr11:120970407-120970457	HMEC	breast:	n/a
9	chr11:120970407-120970457	Caco-2	colon:	n/a
10	chr11:120970407-120970457	PrEC	prostate:	n/a
11	chr11:120970407-120970457	NH-A	brain:	n/a
12	chr11:120970407-120970457	GM12892	blood:	n/a
13	chr11:120970407-120970457	HAEpiC	amniotic membrane:	n/a
14	chr11:120970407-120970457	NB4	blood:	n/a
15	chr11:120970407-120970457	Hepatocyte	liver:	n/a
16	chr11:120970407-120970457	A549	lung:	n/a
17	chr11:120970407-120970457	AG04450	lung:	fetal
18	chr11:120970407-120970457	GM12878	blood:	n/a
19	chr11:120970407-120970457	GM19239	blood:	n/a
20	chr11:120970407-120970457	BE2_C	brain:	n/a
21	chr11:120970407-120970457	HEK293	kidney:	embryo
22	chr11:120970407-120970457	AG09309	skin:	n/a
23	chr11:120970407-120970457	LNCaP	prostate:	n/a
24	chr11:120970407-120970457	RPTEC	kidney:	n/a
25	chr11:120970407-120970457	U87	brain:	n/a
26	chr11:120970407-120970457	HIPEpiC	eye:	n/a
27	chr11:120970407-120970457	CMK	blood:	n/a
28	chr11:120970407-120970457	HRCEpiC	kidney:	n/a
29	chr11:120970407-120970457	HRPEpiC	eye:	n/a
30	chr11:120970407-120970457	AoSMC	blood vessel:	n/a
31	chr11:120970407-120970457	HPAEpiC	pulmonary alveolar:	n/a
32	chr11:120970407-120970457	ovcar-3	ovarian:	n/a
33	chr11:120970407-120970457	Hela-S3	cervix:	n/a
34	chr11:120970407-120970457	MCF10A-Er-Src	breast:	n/a
35	chr11:120970407-120970457	AG09319	gingival:	n/a
36	chr11:120970407-120970457	IMR90	lung:	fetal
37	chr11:120970407-120970457	HCM	heart:	n/a
38	chr11:120970407-120970457	ECC-1	luminal epithelium:	n/a
39	chr11:120970407-120970457	HCF	heart:	n/a
40	chr11:120970407-120970457	PFSK-1	brain:	n/a
41	chr11:120970407-120970457	SK-N-SH	brain:	n/a
42	chr11:120970407-120970457	AG04449	skin:	fetal
43	chr11:120970407-120970457	NT2-D1	testis:	n/a
44	chr11:120970407-120970457	H1-hESC	embryonic stem cell:	embryo
45	chr11:120970407-120970457	ProgFib	skin:	n/a
46	chr11:120970407-120970457	SKMC	muscle:	n/a
47	chr11:120970407-120970457	HRE	kidney:	n/a
48	chr11:120970407-120970457	NHBE	bronchial:	n/a
49	chr11:120970407-120970457	HL-60	blood:	n/a
50	chr11:120970407-120970457	SK-N-MC	brain:	n/a

No data

Variant related genes	Relation type
TECTA	TF binding region
TECTA	CpG island

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10502246	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788247	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794296	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797329	0.90[EUR][1000 genomes]
rs12797404	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803528	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805477	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17124767	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245789	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245796	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939933	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34505832	0.90[EUR][1000 genomes]
rs35457276	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943043	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874069	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120942800-120972000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:120942800-120979000	Weak transcription	Aorta	Aorta
3	chr11:120956000-120971200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:120958200-120971200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:120958200-120975200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:120958800-120971200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:120958800-120980600	Weak transcription	Brain Germinal Matrix	brain
8	chr11:120959200-120971200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:120959200-120971400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:120959600-120975800	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:120959800-120971000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:120959800-120971200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:120962600-120971800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:120962600-120976000	Weak transcription	HSMMtube	muscle
15	chr11:120964600-120971400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:120970200-120970600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:120970200-120970600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:120970200-120970600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:120970200-120970800	Enhancers	Fetal Muscle Leg	muscle
20	chr11:120970200-120970800	Enhancers	Ovary	ovary
21	chr11:120970200-120970800	Enhancers	NHLF	lung
22	chr11:120970200-120971400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:120970400-120970600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:120970400-120970600	Enhancers	A549	lung
25	chr11:120970400-120970600	Bivalent Enhancer	Hela-S3	cervix
26	chr11:120970400-120970800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr11:120970400-120971400	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr11:120970400-120971400	Enhancers	NH-A	brain
29	chr11:120970400-120971600	Enhancers	Fetal Lung	lung
30	chr11:120970400-120971800	Enhancers	Fetal Stomach	stomach
31	chr11:120970400-120972800	Enhancers	HUES48 Cell Line	embryonic stem cell

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