Variant report

Variant	rs12805477
Chromosome Location	chr11:120907961-120907962
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10502246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788247	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794296	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797329	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12797404	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803528	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17124767	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245789	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245796	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939933	0.96[EUR][1000 genomes]
rs34178922	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505832	1.00[EUR][1000 genomes]
rs35457276	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943043	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874069	0.80[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046688	chr11:120894391-120956305	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1039908	chr11:120904893-120936907	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120895800-120918000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:120896000-120910800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:120896000-120910800	Weak transcription	Gastric	stomach
4	chr11:120896000-120915400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:120896000-120919600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:120896000-120938600	Weak transcription	Lung	lung
7	chr11:120896200-120909000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:120896200-120909400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:120896200-120909600	Weak transcription	Small Intestine	intestine
10	chr11:120896200-120913000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:120896200-120916200	Weak transcription	HSMM	muscle
12	chr11:120896200-120916400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:120896200-120916600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:120896200-120924200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:120896200-120959600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:120896400-120916600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:120896400-120917800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:120896400-120918000	Weak transcription	Brain Germinal Matrix	brain
19	chr11:120896400-120924400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:120896600-120917200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr11:120896600-120917600	Weak transcription	Fetal Brain Female	brain
22	chr11:120896600-120917800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:120896600-120924000	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:120896600-120938200	Weak transcription	Fetal Stomach	stomach
25	chr11:120896800-120912200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:120896800-120917600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:120898800-120938400	Weak transcription	Aorta	Aorta
28	chr11:120899200-120912600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:120900800-120917800	Weak transcription	HSMMtube	muscle
30	chr11:120900800-120949800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:120901000-120910800	Weak transcription	Psoas Muscle	Psoas
32	chr11:120901000-120917600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:120901200-120918000	Weak transcription	Left Ventricle	heart
34	chr11:120901400-120915600	Weak transcription	Primary T cells from cord blood	blood
35	chr11:120901400-120924200	Weak transcription	Right Ventricle	heart
36	chr11:120901800-120916400	Weak transcription	Primary B cells from cord blood	blood
37	chr11:120903800-120916400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:120905000-120909200	Weak transcription	Fetal Intestine Large	intestine
39	chr11:120905600-120924400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:120905800-120908000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:120905800-120941600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr11:120906000-120924400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:120906200-120909800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr11:120906200-120911800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:120906400-120909800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:120906400-120909800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:120906600-120910600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr11:120906800-120908400	Weak transcription	HepG2	liver
49	chr11:120906800-120909000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:120906800-120909400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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