Variant report

Variant	rs12816272
Chromosome Location	chr12:4819390-4819391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11063307	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12809178	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809919	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12817218	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821116	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12827952	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12831221	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931649	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17701871	1.00[ASN][1000 genomes]
rs2286579	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34205979	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34214125	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34310347	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34337517	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34475613	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34502100	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34765166	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34947765	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34952740	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35016874	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288424	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35342320	0.83[EUR][1000 genomes]
rs35464779	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35562639	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35715089	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35878255	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35899818	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35925396	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4766273	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5007510	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760751	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59096706	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59986414	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66703365	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67871557	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68144469	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71459918	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038876	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306593	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960763	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv525579	chr12:4816890-4822915	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4799600-4826800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:4807400-4823800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:4810000-4827200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:4811200-4833600	Weak transcription	Brain Germinal Matrix	brain
5	chr12:4817600-4821800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:4817600-4823800	Weak transcription	Liver	Liver
7	chr12:4817800-4825000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr12:4818400-4820000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr12:4819200-4820800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links