Variant report

Variant	rs34952740
Chromosome Location	chr12:4816643-4816644
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:4815512..4817728-chr12:4824833..4826836,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11063307	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809178	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809919	0.87[EUR][1000 genomes]
rs12816272	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817218	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821116	1.00[ASN][1000 genomes]
rs12827952	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12831221	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931649	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17701871	1.00[ASN][1000 genomes]
rs2286579	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34205979	1.00[ASN][1000 genomes]
rs34214125	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34310347	0.85[EUR][1000 genomes]
rs34337517	1.00[ASN][1000 genomes]
rs34475613	1.00[ASN][1000 genomes]
rs34502100	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34765166	1.00[ASN][1000 genomes]
rs34947765	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35016874	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288424	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35464779	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35562639	1.00[ASN][1000 genomes]
rs35715089	0.92[EUR][1000 genomes]
rs35878255	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35899818	1.00[ASN][1000 genomes]
rs35925396	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4766273	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5007510	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760751	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59096706	1.00[ASN][1000 genomes]
rs59986414	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66703365	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67871557	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68144469	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71459918	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038876	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306593	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960763	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4798400-4817200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr12:4799600-4826800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:4804200-4817200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:4806600-4817000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:4807400-4823800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:4810000-4827200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:4810200-4817200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:4810400-4817200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr12:4810600-4817200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr12:4811200-4833600	Weak transcription	Brain Germinal Matrix	brain
11	chr12:4812400-4819000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr12:4816600-4817000	Flanking Active TSS	Liver	Liver

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