Variant report

Variant	rs12821116
Chromosome Location	chr12:4890114-4890115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:4889098..4891222-chr12:4894443..4897225,2	MCF-7	breast:
2	chr12:4873235..4875962-chr12:4887728..4890424,2	MCF-7	breast:
3	chr12:4885919..4888355-chr12:4890021..4892964,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10849118	0.82[CEU][hapmap]
rs11063307	1.00[ASN][1000 genomes]
rs12809178	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809919	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12816272	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817218	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12827952	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12831221	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931649	1.00[ASN][1000 genomes]
rs17701871	0.87[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2286579	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34205979	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34214125	1.00[ASN][1000 genomes]
rs34310347	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34337517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34475613	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34502100	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34765166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34947765	1.00[ASN][1000 genomes]
rs34952740	1.00[ASN][1000 genomes]
rs35016874	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288424	1.00[ASN][1000 genomes]
rs35342320	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35464779	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35562639	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35715089	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35878255	1.00[ASN][1000 genomes]
rs35899818	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35925396	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4766273	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5007510	1.00[ASN][1000 genomes]
rs55760751	1.00[ASN][1000 genomes]
rs59096706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59986414	1.00[ASN][1000 genomes]
rs66703365	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67871557	1.00[ASN][1000 genomes]
rs68144469	1.00[ASN][1000 genomes]
rs71459918	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038876	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306593	1.00[ASN][1000 genomes]
rs960763	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12821116	PRMT8	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4882200-4893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:4882800-4891800	Weak transcription	Brain Germinal Matrix	brain
3	chr12:4884400-4918200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:4885800-4890400	Weak transcription	Brain Anterior Caudate	brain
5	chr12:4886000-4890800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr12:4888000-4891200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr12:4888600-4890200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr12:4889000-4890400	Weak transcription	Brain Hippocampus Middle	brain
9	chr12:4889000-4890800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr12:4889000-4890800	Enhancers	Aorta	Aorta
11	chr12:4889400-4890800	Enhancers	Ovary	ovary
12	chr12:4889400-4894400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:4889600-4890600	Weak transcription	Brain Substantia Nigra	brain
14	chr12:4889600-4891000	Enhancers	Fetal Brain Male	brain
15	chr12:4889800-4890200	Enhancers	Fetal Brain Female	brain
16	chr12:4889800-4890200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr12:4889800-4890200	Enhancers	Stomach Smooth Muscle	stomach
18	chr12:4889800-4890400	Enhancers	Fetal Muscle Leg	muscle
19	chr12:4890000-4890200	Enhancers	Adipose Nuclei	Adipose
20	chr12:4890000-4890200	Bivalent Enhancer	Fetal Stomach	stomach
21	chr12:4890000-4890800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr12:4890000-4890800	Enhancers	Right Atrium	heart
23	chr12:4890000-4891200	Enhancers	Rectal Mucosa Donor 31	rectum

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