Variant report

Variant	rs1282668
Chromosome Location	chr11:74644336-74644337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74642326..74645440-chr11:74646837..74649295,3	K562	blood:
2	chr11:74642736..74644391-chr11:74652414..74654348,2	K562	blood:
3	chr11:74642923..74645207-chr11:74648727..74651390,2	MCF-7	breast:
4	chr11:74638976..74640563-chr11:74642657..74644463,2	MCF-7	breast:
5	chr11:74629970..74632914-chr11:74643600..74645446,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-XRRA1-1	chr11:74644306-74644917	NONHSAT022971

No data

Variant related genes	Relation type
ENSG00000241170	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11236255	0.88[ASN][1000 genomes]
rs1125609	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs113187	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11827626	0.86[ASN][1000 genomes]
rs12223829	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1282675	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1282677	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1315265	0.84[ASN][1000 genomes]
rs1315299	0.93[ASN][1000 genomes]
rs1821352	0.87[ASN][1000 genomes]
rs1866562	0.87[ASN][1000 genomes]
rs2436762	0.86[EUR][1000 genomes]
rs2510692	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs474445	0.87[ASN][1000 genomes]
rs474970	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs483271	0.85[ASN][1000 genomes]
rs487207	0.87[ASN][1000 genomes]
rs487226	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs491826	0.92[ASN][1000 genomes]
rs493889	0.85[ASN][1000 genomes]
rs4944962	0.86[ASN][1000 genomes]
rs496698	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs500827	0.88[ASN][1000 genomes]
rs503855	0.86[ASN][1000 genomes]
rs503994	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs507247	0.86[EUR][1000 genomes]
rs512782	0.84[ASN][1000 genomes]
rs513157	0.86[EUR][1000 genomes]
rs514534	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs515429	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs516287	0.85[ASN][1000 genomes]
rs517666	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs517939	0.86[EUR][1000 genomes]
rs527661	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs528800	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs532952	0.86[EUR][1000 genomes]
rs534595	0.86[ASN][1000 genomes]
rs535705	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs535794	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs536823	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs544891	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs557804	0.84[EUR][1000 genomes]
rs558303	0.86[EUR][1000 genomes]
rs559211	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs571250	0.85[EUR][1000 genomes]
rs571437	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs575064	0.83[EUR][1000 genomes]
rs578477	0.85[ASN][1000 genomes]
rs579581	0.85[ASN][1000 genomes]
rs580541	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs592045	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs605954	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs633824	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs650130	0.91[ASN][1000 genomes]
rs655488	0.89[ASN][1000 genomes]
rs662062	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs670246	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs673731	0.89[ASN][1000 genomes]
rs693212	0.88[ASN][1000 genomes]
rs7121530	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74594800-74646600	Weak transcription	Small Intestine	intestine
2	chr11:74615800-74644800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:74616400-74646000	Weak transcription	Spleen	Spleen
4	chr11:74616400-74656200	Weak transcription	Stomach Mucosa	stomach
5	chr11:74617400-74648200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:74618000-74659600	Weak transcription	Esophagus	oesophagus
7	chr11:74618400-74653800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:74620000-74646200	Weak transcription	Right Ventricle	heart
9	chr11:74620400-74659600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:74627800-74659200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:74628200-74659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:74630000-74645200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:74630000-74646000	Weak transcription	Aorta	Aorta
14	chr11:74630400-74644600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:74630800-74646000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:74630800-74659000	Weak transcription	Fetal Brain Male	brain
17	chr11:74631000-74646000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:74631600-74659000	Weak transcription	Hela-S3	cervix
19	chr11:74632200-74646000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:74632200-74659600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:74632400-74644800	Weak transcription	Fetal Brain Female	brain
22	chr11:74632400-74645600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr11:74632400-74646000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:74632400-74646000	Weak transcription	Brain Germinal Matrix	brain
25	chr11:74632400-74647200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:74632400-74647200	Weak transcription	Lung	lung
27	chr11:74632400-74648400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:74632600-74644400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:74633000-74645600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:74633000-74659400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:74634200-74646200	Weak transcription	Gastric	stomach
32	chr11:74634400-74646600	Weak transcription	Psoas Muscle	Psoas
33	chr11:74636000-74656200	Strong transcription	Fetal Intestine Large	intestine
34	chr11:74636000-74658200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr11:74636800-74648000	Strong transcription	Stomach Smooth Muscle	stomach
36	chr11:74637400-74656400	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:74637600-74646800	Weak transcription	GM12878-XiMat	blood
38	chr11:74637800-74646000	Weak transcription	Brain Substantia Nigra	brain
39	chr11:74637800-74655400	Strong transcription	Fetal Stomach	stomach
40	chr11:74638200-74646000	Weak transcription	Pancreas	Pancrea
41	chr11:74638800-74648400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:74639200-74645000	Strong transcription	Fetal Intestine Small	intestine
43	chr11:74640600-74645600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:74641000-74644600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:74641000-74645200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:74641200-74647200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:74641600-74659000	Weak transcription	A549	lung
48	chr11:74642000-74644600	Weak transcription	Fetal Lung	lung
49	chr11:74642000-74659400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:74642000-74659600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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