Variant report

Variant	rs491826
Chromosome Location	chr11:74584784-74584785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10899043	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11236255	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1125609	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs113187	0.89[ASN][1000 genomes]
rs11827626	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12223829	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1282668	0.92[ASN][1000 genomes]
rs1282675	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1282677	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1315265	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1315299	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1821352	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1866562	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2436762	0.81[ASN][1000 genomes]
rs2510692	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3132738	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3132908	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs474431	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs474445	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs474970	0.81[ASN][1000 genomes]
rs476040	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs483271	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs487207	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs487226	0.86[ASN][1000 genomes]
rs493889	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4944962	0.82[ASN][1000 genomes]
rs496698	0.90[ASN][1000 genomes]
rs498527	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs500827	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs503855	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs503994	0.90[ASN][1000 genomes]
rs504970	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs507247	0.81[ASN][1000 genomes]
rs507305	0.82[EUR][1000 genomes]
rs507620	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs512782	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs513157	0.81[ASN][1000 genomes]
rs514534	0.90[ASN][1000 genomes]
rs516287	0.90[ASN][1000 genomes]
rs517035	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs517666	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs517939	0.81[ASN][1000 genomes]
rs524187	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs525802	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs527099	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs527661	0.81[ASN][1000 genomes]
rs528800	0.91[ASN][1000 genomes]
rs529186	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs533220	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs534595	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs535705	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs536823	0.89[ASN][1000 genomes]
rs544852	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs544891	0.91[ASN][1000 genomes]
rs545202	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs545304	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs548106	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs550909	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs556908	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs556916	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs557804	0.81[ASN][1000 genomes]
rs558303	0.81[ASN][1000 genomes]
rs559211	0.91[ASN][1000 genomes]
rs562581	0.82[ASN][1000 genomes]
rs563473	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs564229	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs571250	0.81[ASN][1000 genomes]
rs571437	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs575064	0.81[ASN][1000 genomes]
rs575886	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs576661	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs578477	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs579581	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs580042	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs580299	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs580541	0.89[ASN][1000 genomes]
rs592045	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs605954	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs633824	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs650130	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs655488	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs662062	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs670246	0.86[ASN][1000 genomes]
rs673731	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs693212	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7121530	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
2	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74562200-74595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:74569800-74588400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:74570000-74588400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:74570600-74585600	ZNF genes & repeats	Dnd41	blood
5	chr11:74570600-74588400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr11:74570800-74584800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:74571000-74588400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr11:74571200-74585200	ZNF genes & repeats	Brain Germinal Matrix	brain
9	chr11:74573600-74588400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:74574200-74588400	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr11:74574800-74586600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr11:74575600-74584800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
13	chr11:74575600-74585000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr11:74575600-74585800	ZNF genes & repeats	Fetal Intestine Large	intestine
15	chr11:74575600-74588400	ZNF genes & repeats	Liver	Liver
16	chr11:74576200-74586600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
17	chr11:74576600-74585000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr11:74579400-74587800	ZNF genes & repeats	Fetal Brain Female	brain
19	chr11:74579400-74588000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:74580400-74584800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr11:74580400-74585800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr11:74580400-74585800	ZNF genes & repeats	Fetal Stomach	stomach
23	chr11:74580400-74586600	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr11:74580600-74584800	ZNF genes & repeats	Colonic Mucosa	Colon
25	chr11:74580600-74585000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:74580600-74585000	ZNF genes & repeats	Fetal Muscle Leg	muscle
27	chr11:74580600-74585800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
28	chr11:74580600-74586600	Weak transcription	HUVEC	blood vessel
29	chr11:74580600-74588000	ZNF genes & repeats	Left Ventricle	heart
30	chr11:74580600-74588200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:74580800-74584800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:74580800-74584800	ZNF genes & repeats	Ovary	ovary
33	chr11:74580800-74587800	ZNF genes & repeats	Aorta	Aorta
34	chr11:74581000-74585000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
35	chr11:74581000-74586000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:74581000-74586200	ZNF genes & repeats	Colon Smooth Muscle	Colon
37	chr11:74581000-74586200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
38	chr11:74581000-74588000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr11:74581000-74588400	ZNF genes & repeats	Fetal Lung	lung
40	chr11:74581200-74584800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr11:74581200-74584800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:74581200-74584800	ZNF genes & repeats	Thymus	Thymus
43	chr11:74581200-74585600	ZNF genes & repeats	Fetal Brain Male	brain
44	chr11:74581400-74584800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
45	chr11:74581400-74584800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr11:74582600-74584800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
47	chr11:74582600-74585000	Strong transcription	NHLF	lung
48	chr11:74582800-74587400	Strong transcription	Rectal Smooth Muscle	rectum
49	chr11:74582800-74587800	Weak transcription	K562	blood
50	chr11:74582800-74588200	Weak transcription	NH-A	brain

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