Variant report

Variant	rs535705
Chromosome Location	chr11:74560624-74560625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74552536..74554674-chr11:74560171..74562245,2	K562	blood:
2	chr11:74559768..74561678-chr11:74563525..74565103,2	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10899043	0.83[ASN][1000 genomes]
rs11236255	0.96[ASN][1000 genomes]
rs1125609	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs113187	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11827626	0.95[ASN][1000 genomes]
rs12223829	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1282668	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1282675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1282677	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1315265	0.92[ASN][1000 genomes]
rs1315299	0.95[ASN][1000 genomes]
rs1821352	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1866562	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2436762	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2510692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3132738	0.83[ASN][1000 genomes]
rs3132908	0.83[ASN][1000 genomes]
rs474431	0.84[ASN][1000 genomes]
rs474445	0.96[ASN][1000 genomes]
rs474970	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs476040	0.83[ASN][1000 genomes]
rs483271	0.93[ASN][1000 genomes]
rs487207	0.96[ASN][1000 genomes]
rs487226	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs491826	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs493889	0.93[ASN][1000 genomes]
rs4944962	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs496698	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs498527	0.84[ASN][1000 genomes]
rs500827	0.96[ASN][1000 genomes]
rs503855	0.95[ASN][1000 genomes]
rs503994	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs504970	0.84[ASN][1000 genomes]
rs507247	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs507620	0.84[ASN][1000 genomes]
rs512782	0.92[ASN][1000 genomes]
rs513157	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs514534	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs515429	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs516287	0.93[ASN][1000 genomes]
rs517035	0.84[ASN][1000 genomes]
rs517666	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs517939	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs524187	0.83[ASN][1000 genomes]
rs525802	0.84[ASN][1000 genomes]
rs527099	0.84[ASN][1000 genomes]
rs527661	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs528800	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs529186	0.84[ASN][1000 genomes]
rs532952	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs534595	0.95[ASN][1000 genomes]
rs535794	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs536823	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs544852	0.84[ASN][1000 genomes]
rs544891	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs545202	0.84[ASN][1000 genomes]
rs545304	0.84[ASN][1000 genomes]
rs548106	0.83[ASN][1000 genomes]
rs550909	0.83[ASN][1000 genomes]
rs556908	0.84[ASN][1000 genomes]
rs556916	0.84[ASN][1000 genomes]
rs557804	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs558303	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs559211	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563473	0.84[ASN][1000 genomes]
rs564229	0.84[ASN][1000 genomes]
rs571250	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs571437	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs575064	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs575886	0.84[ASN][1000 genomes]
rs576661	0.82[ASN][1000 genomes]
rs578477	0.93[ASN][1000 genomes]
rs579581	0.93[ASN][1000 genomes]
rs580042	0.84[ASN][1000 genomes]
rs580299	0.84[ASN][1000 genomes]
rs580541	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs592045	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs605954	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs633824	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs650130	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs655488	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs662062	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs670246	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs673731	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs693212	0.96[ASN][1000 genomes]
rs7121530	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
2	nsv897916	chr11:74465068-74574677	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74528000-74576400	Weak transcription	Stomach Mucosa	stomach
2	chr11:74543800-74565800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:74544200-74570800	Strong transcription	Duodenum Mucosa	Duodenum
4	chr11:74545600-74564600	Strong transcription	Fetal Muscle Trunk	muscle
5	chr11:74545600-74568400	Strong transcription	Fetal Intestine Large	intestine
6	chr11:74545800-74565000	Strong transcription	Fetal Muscle Leg	muscle
7	chr11:74546000-74566800	Strong transcription	Fetal Stomach	stomach
8	chr11:74547600-74571400	Weak transcription	Fetal Brain Male	brain
9	chr11:74547800-74562800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:74549400-74567600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:74550600-74564600	Strong transcription	Fetal Intestine Small	intestine
12	chr11:74551000-74568400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:74552600-74565400	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr11:74552800-74576800	Strong transcription	Stomach Smooth Muscle	stomach
15	chr11:74553800-74569400	Weak transcription	Fetal Heart	heart
16	chr11:74554200-74567600	Weak transcription	Psoas Muscle	Psoas
17	chr11:74554600-74560800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:74554800-74571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:74555800-74560800	Weak transcription	HSMMtube	muscle
20	chr11:74555800-74569800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:74556200-74560800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:74556200-74561600	Weak transcription	GM12878-XiMat	blood
23	chr11:74556800-74562000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:74556800-74562400	Weak transcription	Hela-S3	cervix
25	chr11:74557200-74561800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:74557200-74562800	Weak transcription	K562	blood
27	chr11:74558200-74563400	Strong transcription	Rectal Smooth Muscle	rectum
28	chr11:74558200-74564400	Strong transcription	Thymus	Thymus
29	chr11:74558200-74564600	Strong transcription	Dnd41	blood
30	chr11:74558200-74565200	Strong transcription	Colonic Mucosa	Colon
31	chr11:74558400-74564000	Strong transcription	Fetal Brain Female	brain
32	chr11:74558400-74564200	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:74558400-74564600	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr11:74558600-74560800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:74558600-74561400	Weak transcription	Fetal Kidney	kidney
36	chr11:74558600-74561600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:74558600-74563400	Strong transcription	Brain Anterior Caudate	brain
38	chr11:74558600-74563400	Strong transcription	Left Ventricle	heart
39	chr11:74558600-74563600	Strong transcription	Placenta	Placenta
40	chr11:74558600-74565000	Strong transcription	Primary T cells from cord blood	blood
41	chr11:74558600-74565800	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr11:74558800-74561200	Strong transcription	Primary hematopoietic stem cells	blood
43	chr11:74558800-74561600	Weak transcription	Primary B cells from cord blood	blood
44	chr11:74558800-74562000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr11:74558800-74562000	Weak transcription	HUVEC	blood vessel
46	chr11:74558800-74564600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:74558800-74565400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:74558800-74567400	Weak transcription	Small Intestine	intestine
49	chr11:74559000-74561800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:74559000-74562000	Weak transcription	Primary T cells fromperipheralblood	blood

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