Variant report

Variant	rs514534
Chromosome Location	chr11:74676794-74676795
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74659170..74661534-chr11:74674901..74677094,2	MCF-7	breast:
2	chr11:74649695..74652102-chr11:74676091..74677975,2	K562	blood:
3	chr11:74667515..74671064-chr11:74674801..74677690,4	K562	blood:
4	chr11:74672805..74674764-chr11:74674829..74677378,2	K562	blood:
5	chr11:74658109..74660081-chr11:74673726..74677717,3	K562	blood:
6	chr11:74674114..74677070-chr11:74712523..74714236,2	K562	blood:

Variant related genes	Relation type
ENSG00000118363	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11236255	0.85[ASN][1000 genomes]
rs11236291	0.81[JPT][hapmap]
rs11236292	0.81[JPT][hapmap]
rs1125609	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs113187	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11827626	0.81[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12223829	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1282668	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1282675	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1282677	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1315265	0.81[ASN][1000 genomes]
rs1315299	0.90[ASN][1000 genomes]
rs1821352	0.84[ASN][1000 genomes]
rs1866562	0.81[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2436762	0.83[EUR][1000 genomes]
rs2510692	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs474445	0.84[ASN][1000 genomes]
rs474970	0.83[EUR][1000 genomes]
rs476040	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs483271	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs487207	0.84[ASN][1000 genomes]
rs487226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs491826	0.90[ASN][1000 genomes]
rs493001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs493889	0.82[ASN][1000 genomes]
rs494474	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs4944962	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs496698	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500827	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs503855	0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs503994	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs507247	0.83[EUR][1000 genomes]
rs507620	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs512782	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs513157	0.82[EUR][1000 genomes]
rs515429	0.82[EUR][1000 genomes]
rs516287	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs517035	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs517666	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs517939	0.89[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs527661	0.82[EUR][1000 genomes]
rs528800	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs532952	0.82[EUR][1000 genomes]
rs534595	0.84[ASN][1000 genomes]
rs535705	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs535794	0.82[EUR][1000 genomes]
rs536412	0.81[JPT][hapmap]
rs536823	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs544115	0.81[JPT][hapmap]
rs544891	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs545202	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs545304	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs556916	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs557804	0.81[EUR][1000 genomes]
rs558303	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs559211	0.89[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs562581	0.87[ASN][1000 genomes]
rs563473	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs564229	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs565377	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs571250	0.82[EUR][1000 genomes]
rs571437	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs578477	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs579581	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs580042	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs580541	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs592045	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs605954	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs629191	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs633824	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs639768	0.81[JPT][hapmap]
rs650130	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs655488	0.89[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs662062	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs670246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs671544	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs673731	0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs681566	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs685116	0.81[JPT][hapmap]
rs693212	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7121530	0.85[ASN][1000 genomes]
rs7128833	0.81[JPT][hapmap]
rs7952096	0.81[JPT][hapmap]
rs7952209	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74661200-74688600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:74661600-74686000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:74661800-74699200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:74661800-74699400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:74662000-74677600	Weak transcription	HSMMtube	muscle
6	chr11:74662000-74680800	Weak transcription	Fetal Kidney	kidney
7	chr11:74662000-74682200	Weak transcription	Aorta	Aorta
8	chr11:74662000-74682800	Weak transcription	Colonic Mucosa	Colon
9	chr11:74662200-74677000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:74662200-74677200	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:74662200-74677200	Weak transcription	Thymus	Thymus
12	chr11:74662200-74677800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:74662200-74677800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:74662200-74699600	Weak transcription	Esophagus	oesophagus
15	chr11:74662400-74677800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:74662400-74677800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:74662400-74677800	Weak transcription	Fetal Stomach	stomach
18	chr11:74662400-74680600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:74662400-74691400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:74662600-74682800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:74662600-74686000	Weak transcription	Fetal Brain Male	brain
22	chr11:74662800-74677800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:74662800-74682200	Weak transcription	Lung	lung
24	chr11:74663200-74680000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr11:74664000-74680400	Weak transcription	HMEC	breast
26	chr11:74664200-74677200	Weak transcription	Fetal Lung	lung
27	chr11:74664400-74678000	Weak transcription	Brain Germinal Matrix	brain
28	chr11:74664600-74677800	Weak transcription	NHLF	lung
29	chr11:74665600-74686000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:74666200-74677200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:74667600-74689000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:74667800-74677800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:74667800-74678400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:74667800-74683200	Weak transcription	Small Intestine	intestine
35	chr11:74667800-74692200	Strong transcription	Dnd41	blood
36	chr11:74668000-74677800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:74668000-74680800	Weak transcription	Brain Angular Gyrus	brain
38	chr11:74668600-74682400	Weak transcription	Right Ventricle	heart
39	chr11:74669200-74677600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:74670600-74677200	Weak transcription	Osteobl	bone
41	chr11:74671000-74677800	Weak transcription	Placenta	Placenta
42	chr11:74671000-74682200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:74671200-74677800	Weak transcription	Spleen	Spleen
44	chr11:74671400-74677200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:74671600-74686400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:74671800-74682000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr11:74672000-74677800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:74672000-74682000	Weak transcription	Brain Anterior Caudate	brain
49	chr11:74672000-74692000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:74672400-74677200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links