Variant report

Variant	rs7952096
Chromosome Location	chr11:74744502-74744503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74659227..74660897-chr11:74742251..74744889,2	K562	blood:
2	chr11:74741521..74744619-chr11:74847532..74850514,3	K562	blood:
3	chr11:74742670..74744683-chr11:74780033..74783355,3	K562	blood:

Variant related genes	Relation type
ENSG00000234611	Chromatin interaction
ENSG00000118363	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11236291	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236292	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12287793	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3018833	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs487226	0.81[JPT][hapmap]
rs493001	0.81[JPT][hapmap]
rs494474	0.89[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944962	0.81[JPT][hapmap]
rs514534	0.81[JPT][hapmap]
rs517666	0.81[JPT][hapmap]
rs522808	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs536412	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs544115	0.89[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs551371	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs565377	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs566480	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs568310	0.88[ASN][1000 genomes]
rs58778107	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58972415	0.87[ASN][1000 genomes]
rs59860682	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs605954	0.81[JPT][hapmap]
rs629191	0.81[JPT][hapmap]
rs639768	0.89[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.80[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs650130	0.81[JPT][hapmap]
rs662062	0.81[JPT][hapmap]
rs670246	0.81[JPT][hapmap]
rs671544	0.89[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs674122	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs681566	0.89[CEU][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs685116	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128833	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7939123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7952209	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7952096	PAAF1	cis	cerebellum	SCAN
rs7952096	IL18BP	cis	cerebellum	SCAN
rs7952096	NEU3	cis	parietal	SCAN
rs7952096	XRRA1	cis	lymphoblastoid	seeQTL
rs7952096	KCTD21	cis	cerebellum	SCAN
rs7952096	XRRA1	cis	parietal	SCAN
rs7952096	FCHSD2	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74726600-74746400	Weak transcription	GM12878-XiMat	blood
2	chr11:74741800-74748000	Enhancers	Fetal Intestine Large	intestine
3	chr11:74742200-74748600	Enhancers	Fetal Intestine Small	intestine
4	chr11:74742800-74745600	Enhancers	K562	blood
5	chr11:74743000-74746600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:74743000-74751800	Weak transcription	Right Atrium	heart
7	chr11:74743200-74746400	Weak transcription	Placenta	Placenta
8	chr11:74743200-74746800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:74743200-74746800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:74743200-74747000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:74743200-74747000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:74743200-74747000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:74743200-74747000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:74743200-74747000	Weak transcription	HMEC	breast
15	chr11:74743200-74747200	Weak transcription	Brain Substantia Nigra	brain
16	chr11:74743200-74748800	Weak transcription	Spleen	Spleen
17	chr11:74743400-74744800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:74743600-74747000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:74743800-74746800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:74744000-74746800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:74744200-74745200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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