Variant report

Variant	rs7939123
Chromosome Location	chr11:74744516-74744517
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74659227..74660897-chr11:74742251..74744889,2	K562	blood:
2	chr11:74741521..74744619-chr11:74847532..74850514,3	K562	blood:
3	chr11:74742670..74744683-chr11:74780033..74783355,3	K562	blood:

Variant related genes	Relation type
ENSG00000234611	Chromatin interaction
ENSG00000118363	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11236291	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236292	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12287793	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3018833	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs494474	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs522808	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs536412	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs544115	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs551371	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs565377	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs566480	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs568310	0.87[ASN][1000 genomes]
rs58778107	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58972415	0.88[ASN][1000 genomes]
rs59860682	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs639768	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs671544	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs674122	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs681566	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs685116	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7128833	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7952096	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7952209	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74726600-74746400	Weak transcription	GM12878-XiMat	blood
2	chr11:74741800-74748000	Enhancers	Fetal Intestine Large	intestine
3	chr11:74742200-74748600	Enhancers	Fetal Intestine Small	intestine
4	chr11:74742800-74745600	Enhancers	K562	blood
5	chr11:74743000-74746600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:74743000-74751800	Weak transcription	Right Atrium	heart
7	chr11:74743200-74746400	Weak transcription	Placenta	Placenta
8	chr11:74743200-74746800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:74743200-74746800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:74743200-74747000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:74743200-74747000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:74743200-74747000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:74743200-74747000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:74743200-74747000	Weak transcription	HMEC	breast
15	chr11:74743200-74747200	Weak transcription	Brain Substantia Nigra	brain
16	chr11:74743200-74748800	Weak transcription	Spleen	Spleen
17	chr11:74743400-74744800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:74743600-74747000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:74743800-74746800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:74744000-74746800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:74744200-74745200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links