Variant report

Variant	rs11236292
Chromosome Location	chr11:74735237-74735238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74732707..74737520-chr11:74738671..74743586,5	MCF-7	breast:
2	chr11:74735037..74738076-chr11:74739578..74743137,3	K562	blood:
3	chr11:74659558..74661060-chr11:74734935..74736828,2	K562	blood:
4	chr11:74734239..74737191-chr11:74823772..74825545,2	K562	blood:
5	chr11:74734190..74735729-chr11:74958349..74960779,2	K562	blood:

Variant related genes	Relation type
ENSG00000118363	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11236291	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287793	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1866562	0.81[CEU][hapmap]
rs3018833	0.89[ASN][1000 genomes]
rs487226	0.81[JPT][hapmap]
rs493001	0.81[JPT][hapmap]
rs494474	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4944962	0.81[JPT][hapmap]
rs514534	0.81[JPT][hapmap]
rs517666	0.81[JPT][hapmap]
rs522808	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs536412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs544115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551371	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs565377	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs566480	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568310	0.91[ASN][1000 genomes]
rs58778107	0.96[ASN][1000 genomes]
rs58972415	0.85[ASN][1000 genomes]
rs59860682	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605954	0.81[JPT][hapmap]
rs629191	0.81[JPT][hapmap]
rs639768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650130	0.81[JPT][hapmap]
rs662062	0.81[JPT][hapmap]
rs670246	0.81[JPT][hapmap]
rs671544	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs674122	0.93[ASN][1000 genomes]
rs681566	0.82[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs685116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7128833	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939123	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7952096	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7952209	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74724600-74735400	Weak transcription	Aorta	Aorta
2	chr11:74725600-74737000	Weak transcription	Thymus	Thymus
3	chr11:74726600-74746400	Weak transcription	GM12878-XiMat	blood
4	chr11:74732000-74737800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:74732400-74736600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr11:74733200-74736800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr11:74733200-74738400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:74733400-74735400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:74733600-74736400	Enhancers	K562	blood
10	chr11:74733800-74735600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:74733800-74736400	Enhancers	Brain Substantia Nigra	brain
12	chr11:74734200-74736400	Enhancers	Brain Angular Gyrus	brain
13	chr11:74734200-74736400	Enhancers	Brain Hippocampus Middle	brain
14	chr11:74734200-74736600	Enhancers	Brain Anterior Caudate	brain
15	chr11:74734200-74736800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr11:74734400-74735800	Weak transcription	Fetal Intestine Large	intestine
17	chr11:74734400-74742200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:74734600-74735800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:74734600-74735800	Weak transcription	Fetal Intestine Small	intestine
20	chr11:74734600-74739000	Weak transcription	Psoas Muscle	Psoas
21	chr11:74734800-74736000	Weak transcription	Brain Germinal Matrix	brain
22	chr11:74735000-74735800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:74735000-74739200	Weak transcription	NHDF-Ad	bronchial
24	chr11:74735200-74735400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:74735200-74736400	Enhancers	Brain Cingulate Gyrus	brain
26	chr11:74735200-74741600	Weak transcription	Left Ventricle	heart

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