Variant report

Variant	rs674122
Chromosome Location	chr11:74728418-74728419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74720689..74723993-chr11:74726887..74730730,4	K562	blood:
2	chr11:74720292..74723058-chr11:74725364..74728769,4	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11236291	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11236292	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12287793	0.91[ASN][1000 genomes]
rs3018833	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs487226	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs493001	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs494474	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944962	0.81[JPT][hapmap]
rs514534	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs517666	0.81[JPT][hapmap]
rs522808	0.94[ASN][1000 genomes]
rs536412	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs544115	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs551371	0.90[ASN][1000 genomes]
rs565377	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs566480	0.93[ASN][1000 genomes]
rs568310	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58778107	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58972415	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59860682	0.93[ASN][1000 genomes]
rs605954	0.81[JPT][hapmap]
rs629191	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs639768	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs650130	0.81[JPT][hapmap]
rs662062	0.81[JPT][hapmap]
rs670246	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs671544	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs681566	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs685116	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7128833	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7939123	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7952096	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7952209	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74718000-74733800	Weak transcription	Brain Substantia Nigra	brain
2	chr11:74718000-74734200	Weak transcription	Right Ventricle	heart
3	chr11:74718200-74729200	Weak transcription	Gastric	stomach
4	chr11:74718400-74729800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:74719400-74728600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:74721600-74733400	Weak transcription	Pancreas	Pancrea
7	chr11:74721600-74734200	Weak transcription	Brain Angular Gyrus	brain
8	chr11:74721600-74734200	Weak transcription	Brain Anterior Caudate	brain
9	chr11:74721600-74734200	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:74721600-74734200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:74721600-74734200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:74721800-74729400	Weak transcription	Fetal Intestine Small	intestine
13	chr11:74722800-74730200	Weak transcription	Fetal Intestine Large	intestine
14	chr11:74723400-74730200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:74723600-74729400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:74723600-74731800	Weak transcription	Left Ventricle	heart
17	chr11:74723800-74729200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:74723800-74733800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:74724000-74734200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:74724200-74730400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:74724400-74730200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr11:74724600-74730800	Weak transcription	Fetal Stomach	stomach
23	chr11:74724600-74735400	Weak transcription	Aorta	Aorta
24	chr11:74725000-74730200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:74725400-74729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:74725400-74731000	Weak transcription	Liver	Liver
27	chr11:74725600-74728600	Weak transcription	Primary B cells from cord blood	blood
28	chr11:74725600-74728600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:74725600-74730200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:74725600-74737000	Weak transcription	Thymus	Thymus
31	chr11:74726000-74732000	Weak transcription	Fetal Heart	heart
32	chr11:74726600-74746400	Weak transcription	GM12878-XiMat	blood
33	chr11:74727400-74728600	Weak transcription	Fetal Thymus	thymus
34	chr11:74727600-74731800	Weak transcription	Psoas Muscle	Psoas
35	chr11:74727600-74731800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:74728000-74729800	Weak transcription	Primary T cells from cord blood	blood
37	chr11:74728200-74729800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr11:74728200-74731600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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