Variant report

Variant	rs522808
Chromosome Location	chr11:74730430-74730431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74720689..74723993-chr11:74726887..74730730,4	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11236291	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236292	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12287793	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3018833	0.88[ASN][1000 genomes]
rs494474	0.95[ASN][1000 genomes]
rs536412	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs544115	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs551371	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs565377	0.95[ASN][1000 genomes]
rs566480	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs568310	0.90[ASN][1000 genomes]
rs58778107	0.95[ASN][1000 genomes]
rs58972415	0.85[ASN][1000 genomes]
rs59860682	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs639768	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs671544	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs674122	0.94[ASN][1000 genomes]
rs681566	0.89[ASN][1000 genomes]
rs685116	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7128833	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7939123	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7952096	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952209	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74718000-74733800	Weak transcription	Brain Substantia Nigra	brain
2	chr11:74718000-74734200	Weak transcription	Right Ventricle	heart
3	chr11:74721600-74733400	Weak transcription	Pancreas	Pancrea
4	chr11:74721600-74734200	Weak transcription	Brain Angular Gyrus	brain
5	chr11:74721600-74734200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:74721600-74734200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:74721600-74734200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:74721600-74734200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:74723600-74731800	Weak transcription	Left Ventricle	heart
10	chr11:74723800-74733800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:74724000-74734200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:74724600-74730800	Weak transcription	Fetal Stomach	stomach
13	chr11:74724600-74735400	Weak transcription	Aorta	Aorta
14	chr11:74725400-74731000	Weak transcription	Liver	Liver
15	chr11:74725600-74737000	Weak transcription	Thymus	Thymus
16	chr11:74726000-74732000	Weak transcription	Fetal Heart	heart
17	chr11:74726600-74746400	Weak transcription	GM12878-XiMat	blood
18	chr11:74727600-74731800	Weak transcription	Psoas Muscle	Psoas
19	chr11:74727600-74731800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:74728200-74731600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:74729400-74732600	ZNF genes & repeats	Fetal Intestine Small	intestine
22	chr11:74730200-74731000	ZNF genes & repeats	Fetal Intestine Large	intestine
23	chr11:74730400-74730600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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