Variant report

Variant	rs59860682
Chromosome Location	chr11:74736197-74736198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74732707..74737520-chr11:74738671..74743586,5	MCF-7	breast:
2	chr11:74735572..74736278-chr11:74952296..74952887,2	K562	blood:
3	chr11:74735037..74738076-chr11:74739578..74743137,3	K562	blood:
4	chr11:74659558..74661060-chr11:74734935..74736828,2	K562	blood:
5	chr11:74731114..74733845-chr11:74735387..74737744,2	K562	blood:
6	chr11:74734239..74737191-chr11:74823772..74825545,2	K562	blood:

Variant related genes	Relation type
ENSG00000118363	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11236291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236292	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287793	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3018833	0.89[ASN][1000 genomes]
rs494474	0.96[ASN][1000 genomes]
rs522808	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs536412	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs544115	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs565377	0.96[ASN][1000 genomes]
rs566480	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568310	0.91[ASN][1000 genomes]
rs58778107	0.96[ASN][1000 genomes]
rs58972415	0.85[ASN][1000 genomes]
rs639768	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671544	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs674122	0.93[ASN][1000 genomes]
rs681566	0.90[ASN][1000 genomes]
rs685116	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7128833	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939123	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7952096	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7952209	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74725600-74737000	Weak transcription	Thymus	Thymus
2	chr11:74726600-74746400	Weak transcription	GM12878-XiMat	blood
3	chr11:74732000-74737800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:74732400-74736600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr11:74733200-74736800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:74733200-74738400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:74733600-74736400	Enhancers	K562	blood
8	chr11:74733800-74736400	Enhancers	Brain Substantia Nigra	brain
9	chr11:74734200-74736400	Enhancers	Brain Angular Gyrus	brain
10	chr11:74734200-74736400	Enhancers	Brain Hippocampus Middle	brain
11	chr11:74734200-74736600	Enhancers	Brain Anterior Caudate	brain
12	chr11:74734200-74736800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:74734400-74742200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:74734600-74739000	Weak transcription	Psoas Muscle	Psoas
15	chr11:74735000-74739200	Weak transcription	NHDF-Ad	bronchial
16	chr11:74735200-74736400	Enhancers	Brain Cingulate Gyrus	brain
17	chr11:74735200-74741600	Weak transcription	Left Ventricle	heart
18	chr11:74735400-74738600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:74735400-74742400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:74735800-74736200	Enhancers	Fetal Intestine Small	intestine
21	chr11:74735800-74736400	Enhancers	Fetal Intestine Large	intestine
22	chr11:74736000-74736400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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