Variant report

Variant	rs671544
Chromosome Location	chr11:74697652-74697653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74658436..74661013-chr11:74696774..74699429,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166435	Chromatin interaction
ENSG00000118363	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11236291	0.94[CEU][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236292	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1125609	0.87[JPT][hapmap]
rs113187	0.93[JPT][hapmap]
rs11827626	0.81[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap]
rs12287793	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1866562	0.81[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap]
rs3018833	0.92[ASN][1000 genomes]
rs483271	0.81[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs487226	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs493001	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs494474	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4944962	0.93[JPT][hapmap]
rs500827	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs503855	0.80[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap]
rs512782	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs514534	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs516287	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs517666	0.93[JPT][hapmap]
rs522808	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs536412	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs544115	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs544891	0.93[JPT][hapmap]
rs551371	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs559211	0.87[JPT][hapmap]
rs565377	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs566480	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs568310	0.81[ASN][1000 genomes]
rs578477	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs579581	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs58778107	0.86[ASN][1000 genomes]
rs58972415	0.80[ASN][1000 genomes]
rs59860682	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs605954	0.93[JPT][hapmap]
rs629191	0.93[JPT][hapmap]
rs639768	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs650130	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs655488	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs662062	0.93[JPT][hapmap]
rs670246	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs673731	0.80[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap]
rs674122	0.84[ASN][1000 genomes]
rs681566	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs685116	1.00[CEU][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs693212	0.81[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs7128833	0.95[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7939123	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7952096	0.89[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7952209	0.84[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74661800-74699200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:74661800-74699400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:74662200-74699600	Weak transcription	Esophagus	oesophagus
4	chr11:74675600-74699400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:74678600-74699200	Weak transcription	Spleen	Spleen
6	chr11:74681000-74699200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:74681200-74699600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:74684400-74699200	Weak transcription	Pancreas	Pancrea
9	chr11:74684800-74699200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:74686400-74699400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:74686800-74699200	Weak transcription	Aorta	Aorta
12	chr11:74686800-74699400	Weak transcription	Fetal Brain Male	brain
13	chr11:74687200-74699200	Weak transcription	Right Ventricle	heart
14	chr11:74687600-74699600	Weak transcription	NHEK	skin
15	chr11:74687800-74699600	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:74687800-74700000	Weak transcription	Fetal Heart	heart
17	chr11:74689400-74699200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:74689400-74699200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:74689400-74699200	Weak transcription	Hela-S3	cervix
20	chr11:74689400-74699200	Weak transcription	HUVEC	blood vessel
21	chr11:74689400-74699400	Weak transcription	Brain Anterior Caudate	brain
22	chr11:74689400-74699400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:74689400-74699600	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:74689600-74699000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:74689600-74699200	Weak transcription	Primary B cells from cord blood	blood
26	chr11:74689600-74699200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:74689600-74699200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:74689600-74699200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:74689600-74699200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr11:74689600-74699200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:74689600-74699400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:74689600-74699400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:74689600-74699400	Weak transcription	NHLF	lung
34	chr11:74689600-74699600	Weak transcription	Brain Substantia Nigra	brain
35	chr11:74689800-74699200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:74689800-74699200	Weak transcription	Colonic Mucosa	Colon
37	chr11:74690000-74699000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:74690000-74699200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:74690000-74699400	Weak transcription	NHDF-Ad	bronchial
40	chr11:74690200-74699200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:74690200-74699200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:74690200-74699200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:74690200-74699200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:74690200-74699600	Weak transcription	Small Intestine	intestine
45	chr11:74690400-74699200	Weak transcription	Brain Angular Gyrus	brain
46	chr11:74690600-74699400	Weak transcription	Ovary	ovary
47	chr11:74691000-74699200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:74691000-74699200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:74691200-74699200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:74691200-74699200	Weak transcription	A549	lung

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