Variant report

Variant	rs1284780
Chromosome Location	chr3:102231290-102231291
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1151314	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1151315	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1151320	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1151321	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1284784	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1299752	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2670132	0.82[ASN][1000 genomes]
rs7647414	0.82[ASN][1000 genomes]
rs883818	0.80[ASN][1000 genomes]
rs938421	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv3926	chr3:102213136-102257633	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102229400-102231600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:102229800-102231600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:102229800-102239200	Weak transcription	Fetal Lung	lung
4	chr3:102230000-102231400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:102230000-102231400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:102230400-102231800	Enhancers	NHEK	skin
7	chr3:102231000-102231400	Active TSS	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links