Variant report

Variant	rs2670132
Chromosome Location	chr3:102197454-102197455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1151314	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1151315	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1151320	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1151321	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1151328	0.84[EUR][1000 genomes]
rs1151337	0.84[EUR][1000 genomes]
rs1284780	0.82[ASN][1000 genomes]
rs1284784	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1299752	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7647414	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883818	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs938421	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2670132	ABI3BP	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102194400-102200200	Enhancers	Fetal Lung	lung
2	chr3:102195200-102197800	Enhancers	Fetal Intestine Small	intestine
3	chr3:102195800-102201600	Weak transcription	Hela-S3	cervix
4	chr3:102196600-102197800	Enhancers	Duodenum Mucosa	Duodenum
5	chr3:102196800-102198400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:102197200-102198200	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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