Variant report

Variant	rs7647414
Chromosome Location	chr3:102198169-102198170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1151314	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1151315	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1151320	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1151321	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1151328	0.90[EUR][1000 genomes]
rs1151337	0.90[EUR][1000 genomes]
rs1284780	0.82[ASN][1000 genomes]
rs1284784	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1299752	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2670132	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2971239	1.00[YRI][hapmap]
rs883818	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs938421	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102194400-102200200	Enhancers	Fetal Lung	lung
2	chr3:102195800-102201600	Weak transcription	Hela-S3	cervix
3	chr3:102196800-102198400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:102197200-102198200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr3:102197800-102198800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:102197800-102202800	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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