Variant report

Variant	rs12853445
Chromosome Location	chr13:66904734-66904735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12874413	0.89[YRI][hapmap]
rs1413572	0.80[EUR][1000 genomes]
rs1444385	0.81[CEU][hapmap]
rs1928959	0.80[EUR][1000 genomes]
rs1982305	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2210132	0.80[EUR][1000 genomes]
rs2324908	0.80[EUR][1000 genomes]
rs2781779	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4883774	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs4883776	0.81[CEU][hapmap]
rs4884668	0.91[CEU][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7318787	0.80[EUR][1000 genomes]
rs7320153	0.80[EUR][1000 genomes]
rs7990071	0.80[EUR][1000 genomes]
rs7992755	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs9529047	0.80[EUR][1000 genomes]
rs9540711	0.87[EUR][1000 genomes]
rs9564308	0.80[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9571571	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9571572	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9571574	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047991	chr13:65982529-66931617	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv530416	chr13:66198235-67126195	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1053763	chr13:66210166-67184972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv541811	chr13:66210166-67184972	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv932195	chr13:66215786-67215733	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv530723	chr13:66219650-67200316	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1052017	chr13:66232288-67213033	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv534503	chr13:66287963-67126195	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv915828	chr13:66544825-67212201	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv1041133	chr13:66723731-67530595	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv900388	chr13:66798923-66919700	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv1054050	chr13:66821545-66914754	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv900389	chr13:66867794-66961006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:66902800-66910000	Weak transcription	Gastric	stomach
2	chr13:66903400-66905400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:66903400-66905400	Enhancers	Brain Cingulate Gyrus	brain
4	chr13:66903600-66904800	Enhancers	Primary hematopoietic stem cells	blood
5	chr13:66903600-66904800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:66903600-66904800	Enhancers	Brain Anterior Caudate	brain
7	chr13:66903600-66905000	Enhancers	Brain Hippocampus Middle	brain
8	chr13:66903600-66905600	Enhancers	Fetal Brain Male	brain
9	chr13:66903800-66904800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:66903800-66904800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr13:66904000-66905000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:66904000-66905200	Enhancers	Fetal Heart	heart
13	chr13:66904000-66905400	Enhancers	Brain Substantia Nigra	brain
14	chr13:66904200-66904800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:66904200-66905000	Enhancers	Primary B cells from cord blood	blood
16	chr13:66904200-66905400	Enhancers	Brain Angular Gyrus	brain
17	chr13:66904600-66904800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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