Variant report

Variant	rs1288077
Chromosome Location	chr6:119776756-119776757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119774448..119776826-chr6:119788102..119790606,2	MCF-7	breast:
2	chr6:119775117..119777566-chr6:119786329..119787981,2	K562	blood:
3	chr6:119770080..119773062-chr6:119774639..119776880,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1112369	0.92[EUR][1000 genomes]
rs11153823	0.85[CHB][hapmap]
rs11153828	0.92[EUR][1000 genomes]
rs12195597	0.87[ASN][1000 genomes]
rs12199966	0.87[ASN][1000 genomes]
rs12202672	0.87[ASN][1000 genomes]
rs12660903	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12661049	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1288080	0.94[EUR][1000 genomes]
rs1288081	0.90[EUR][1000 genomes]
rs1318271	0.96[EUR][1000 genomes]
rs1344333	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1353864	0.92[EUR][1000 genomes]
rs1392088	0.87[ASN][1000 genomes]
rs1392090	0.92[EUR][1000 genomes]
rs1499569	0.89[EUR][1000 genomes]
rs1553171	0.92[EUR][1000 genomes]
rs17081283	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17081375	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17081423	0.88[CEU][hapmap];0.84[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1875056	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1963055	0.92[EUR][1000 genomes]
rs2066353	0.96[EUR][1000 genomes]
rs2153823	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs2185752	0.96[EUR][1000 genomes]
rs2357380	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3891962	0.87[EUR][1000 genomes]
rs4142806	0.88[CEU][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4551205	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4613849	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4945640	0.92[EUR][1000 genomes]
rs4945642	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4946417	0.89[EUR][1000 genomes]
rs4946418	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946420	0.96[EUR][1000 genomes]
rs4946423	0.86[AMR][1000 genomes]
rs4946426	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4946427	0.88[CEU][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56081039	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56091753	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56346325	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6569081	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569083	0.87[ASN][1000 genomes]
rs6915295	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918211	0.92[EUR][1000 genomes]
rs6923080	0.92[EUR][1000 genomes]
rs6923700	0.87[ASN][1000 genomes]
rs6935310	0.91[EUR][1000 genomes]
rs6940248	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7452780	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7738873	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745025	0.82[JPT][hapmap]
rs7745217	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757317	0.84[MEX][hapmap]
rs904574	0.92[EUR][1000 genomes]
rs9320693	0.87[ASN][1000 genomes]
rs9320694	0.88[CEU][hapmap];0.84[JPT][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9385073	0.92[EUR][1000 genomes]
rs9385076	0.87[ASN][1000 genomes]
rs9385077	0.87[ASN][1000 genomes]
rs9387652	0.89[EUR][1000 genomes]
rs9398513	0.89[CHB][hapmap]
rs9398516	0.87[ASN][1000 genomes]
rs9401151	0.87[ASN][1000 genomes]
rs9481922	0.89[EUR][1000 genomes]
rs9481923	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9481924	0.89[EUR][1000 genomes]
rs9481927	0.89[EUR][1000 genomes]
rs9481929	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9481930	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9481931	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9481933	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9481936	0.88[CEU][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9489714	0.89[EUR][1000 genomes]
rs9489715	0.89[EUR][1000 genomes]
rs9489716	0.89[EUR][1000 genomes]
rs9489717	0.89[EUR][1000 genomes]
rs9489718	0.89[EUR][1000 genomes]
rs9489719	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9489720	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9489723	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9489724	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9489725	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9489727	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9489728	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9489729	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9489731	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9489733	0.88[CEU][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9885803	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119768200-119780400	Weak transcription	Aorta	Aorta
2	chr6:119770800-119780000	Weak transcription	Gastric	stomach
3	chr6:119771400-119780000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:119774600-119777400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:119774800-119779400	Weak transcription	Spleen	Spleen
6	chr6:119775000-119777200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:119775600-119776800	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:119775600-119777000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:119775600-119777200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:119775600-119777800	Enhancers	Adipose Nuclei	Adipose
11	chr6:119775800-119777000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:119776200-119780000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:119776200-119789200	Weak transcription	Fetal Heart	heart
14	chr6:119776600-119777200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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