Variant report

Variant	rs1344333
Chromosome Location	chr6:119784012-119784013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1112369	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11153823	0.86[CHB][hapmap]
rs11153828	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12195597	0.87[ASN][1000 genomes]
rs12199966	0.87[ASN][1000 genomes]
rs12202672	0.87[ASN][1000 genomes]
rs12660903	0.90[EUR][1000 genomes]
rs12661049	0.92[EUR][1000 genomes]
rs1288077	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288080	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1288081	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1318271	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1353864	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1392088	0.87[ASN][1000 genomes]
rs1392090	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1499569	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1553171	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17081283	0.98[EUR][1000 genomes]
rs17081375	0.92[EUR][1000 genomes]
rs17081423	1.00[CEU][hapmap];0.84[JPT][hapmap];0.92[EUR][1000 genomes]
rs1875056	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1963055	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2066353	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2153823	0.88[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2185752	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2357380	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3891962	0.92[EUR][1000 genomes]
rs4142806	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs4551205	0.92[EUR][1000 genomes]
rs4613849	0.92[EUR][1000 genomes]
rs4945640	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4945642	0.92[EUR][1000 genomes]
rs4946417	0.94[EUR][1000 genomes]
rs4946418	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946420	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4946423	0.80[EUR][1000 genomes]
rs4946426	0.92[EUR][1000 genomes]
rs4946427	1.00[CEU][hapmap];0.80[JPT][hapmap];0.92[EUR][1000 genomes]
rs56081039	0.92[EUR][1000 genomes]
rs56091753	0.92[EUR][1000 genomes]
rs56346325	0.86[EUR][1000 genomes]
rs6569081	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569083	0.87[ASN][1000 genomes]
rs6915295	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918211	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6923080	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6923700	0.87[ASN][1000 genomes]
rs6935310	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6940248	0.92[EUR][1000 genomes]
rs7452780	0.92[EUR][1000 genomes]
rs7738873	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745217	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904574	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9320693	0.87[ASN][1000 genomes]
rs9320694	1.00[CEU][hapmap];0.84[JPT][hapmap];0.92[EUR][1000 genomes]
rs9385073	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9385076	0.87[ASN][1000 genomes]
rs9385077	0.87[ASN][1000 genomes]
rs9387652	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9398513	0.90[CHB][hapmap]
rs9398516	0.87[ASN][1000 genomes]
rs9401151	0.87[ASN][1000 genomes]
rs9481922	0.94[EUR][1000 genomes]
rs9481923	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9481924	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs9481927	0.94[EUR][1000 genomes]
rs9481929	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481930	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481931	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481933	0.98[EUR][1000 genomes]
rs9481936	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs9489714	0.94[EUR][1000 genomes]
rs9489715	0.94[EUR][1000 genomes]
rs9489716	0.94[EUR][1000 genomes]
rs9489717	0.94[EUR][1000 genomes]
rs9489718	0.94[EUR][1000 genomes]
rs9489719	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489720	0.98[EUR][1000 genomes]
rs9489723	0.92[EUR][1000 genomes]
rs9489724	0.90[EUR][1000 genomes]
rs9489725	0.92[EUR][1000 genomes]
rs9489727	0.92[EUR][1000 genomes]
rs9489728	0.92[EUR][1000 genomes]
rs9489729	0.92[EUR][1000 genomes]
rs9489731	0.92[EUR][1000 genomes]
rs9489733	1.00[CEU][hapmap];0.80[JPT][hapmap];0.92[EUR][1000 genomes]
rs9885803	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119776200-119789200	Weak transcription	Fetal Heart	heart
2	chr6:119777600-119784200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:119781600-119784200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:119783200-119785600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr6:119783400-119785600	Enhancers	Dnd41	blood
6	chr6:119783600-119784800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:119784000-119784800	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:119784000-119784800	Enhancers	Fetal Thymus	thymus
9	chr6:119784000-119785400	Flanking Active TSS	GM12878-XiMat	blood

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