Variant report

Variant	rs1392088
Chromosome Location	chr6:119868691-119868692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119865503..119867117-chr6:119868492..119870588,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11153823	0.81[CEU][hapmap]
rs12195597	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12199966	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12202672	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1288077	0.87[ASN][1000 genomes]
rs1341490	0.96[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1344333	0.87[ASN][1000 genomes]
rs1499562	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1499566	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17081423	0.84[JPT][hapmap]
rs2036256	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2153823	0.84[JPT][hapmap]
rs2185754	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2357380	0.87[ASN][1000 genomes]
rs2357523	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34594936	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4142806	0.81[JPT][hapmap]
rs4945644	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4946418	0.87[ASN][1000 genomes]
rs4946424	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4946427	0.80[JPT][hapmap]
rs6569081	0.87[ASN][1000 genomes]
rs6569083	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6913097	0.96[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6915295	0.87[ASN][1000 genomes]
rs6923700	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936781	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7738873	0.87[ASN][1000 genomes]
rs7745025	0.96[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7745217	0.87[ASN][1000 genomes]
rs9320693	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320694	0.84[JPT][hapmap]
rs9372541	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9385076	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385077	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9398513	0.84[CEU][hapmap];0.80[CHB][hapmap]
rs9398516	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401151	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401152	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9481923	0.82[ASN][1000 genomes]
rs9481936	0.81[JPT][hapmap]
rs9489733	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119868200-119868800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:119868400-119868800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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