Variant report

Variant	rs12881201
Chromosome Location	chr14:25273437-25273438
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10483288	1.00[ASN][1000 genomes]
rs11850146	1.00[ASN][1000 genomes]
rs12878069	1.00[ASN][1000 genomes]
rs12879077	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12879323	1.00[ASN][1000 genomes]
rs12881381	1.00[ASN][1000 genomes]
rs12885468	1.00[ASN][1000 genomes]
rs12886050	1.00[ASN][1000 genomes]
rs12886059	1.00[ASN][1000 genomes]
rs12886766	1.00[ASN][1000 genomes]
rs12893363	1.00[ASN][1000 genomes]
rs12893496	1.00[ASN][1000 genomes]
rs12895258	1.00[ASN][1000 genomes]
rs12897835	1.00[ASN][1000 genomes]
rs1461645	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551775	1.00[ASN][1000 genomes]
rs17108566	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108738	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109263	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs17795652	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088325	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34164371	1.00[ASN][1000 genomes]
rs34604102	1.00[ASN][1000 genomes]
rs35779777	1.00[ASN][1000 genomes]
rs4097492	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4983020	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4983021	0.82[EUR][1000 genomes]
rs4983025	1.00[ASN][1000 genomes]
rs71405872	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018441	1.00[ASN][1000 genomes]
rs854340	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1035284	chr14:25267840-25285191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv542003	chr14:25267840-25285191	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv525203	chr14:25270335-25282967	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv456169	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv564071	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25266600-25273800	Weak transcription	Stomach Mucosa	stomach
2	chr14:25272200-25275400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:25272400-25283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:25273000-25274000	Enhancers	Right Ventricle	heart
5	chr14:25273200-25276800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:25273400-25274600	Enhancers	Lung	lung
7	chr14:25273400-25275200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:25273400-25276200	Enhancers	Fetal Lung	lung
9	chr14:25273400-25276200	Enhancers	HepG2	liver
10	chr14:25273400-25277600	Enhancers	Fetal Intestine Small	intestine
11	chr14:25273400-25277600	Weak transcription	Pancreas	Pancrea
12	chr14:25273400-25278200	Enhancers	Fetal Intestine Large	intestine

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