Variant report

Variant	rs4097492
Chromosome Location	chr14:25283341-25283342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10483288	1.00[ASN][1000 genomes]
rs11850146	1.00[ASN][1000 genomes]
rs12878069	1.00[ASN][1000 genomes]
rs12879077	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12879323	1.00[ASN][1000 genomes]
rs12881201	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881381	1.00[ASN][1000 genomes]
rs12885468	1.00[ASN][1000 genomes]
rs12886050	1.00[ASN][1000 genomes]
rs12886059	1.00[ASN][1000 genomes]
rs12886766	1.00[ASN][1000 genomes]
rs12893363	1.00[ASN][1000 genomes]
rs12893496	1.00[ASN][1000 genomes]
rs12895258	1.00[ASN][1000 genomes]
rs12897835	1.00[ASN][1000 genomes]
rs1461645	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551775	1.00[ASN][1000 genomes]
rs17108566	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108738	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109263	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs17795652	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088325	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34164371	1.00[ASN][1000 genomes]
rs35779777	1.00[ASN][1000 genomes]
rs4983020	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4983021	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4983025	1.00[ASN][1000 genomes]
rs71405872	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018441	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs854340	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1035284	chr14:25267840-25285191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv542003	chr14:25267840-25285191	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv456169	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv564071	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25272400-25283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:25275200-25285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:25275400-25285000	Weak transcription	Lung	lung
4	chr14:25276200-25285400	Weak transcription	Adipose Nuclei	Adipose
5	chr14:25276200-25286600	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:25276600-25284800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr14:25276800-25284800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:25277800-25286600	Weak transcription	Placenta	Placenta
9	chr14:25278000-25286400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:25278600-25283800	Enhancers	Fetal Intestine Small	intestine
11	chr14:25278600-25287600	Enhancers	Fetal Intestine Large	intestine
12	chr14:25278800-25284800	Weak transcription	HSMM	muscle
13	chr14:25279400-25284800	Enhancers	Fetal Heart	heart
14	chr14:25279800-25284800	Weak transcription	Fetal Kidney	kidney
15	chr14:25279800-25284800	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:25279800-25284800	Weak transcription	Right Atrium	heart
17	chr14:25279800-25285600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:25279800-25286400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:25279800-25286800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:25279800-25287400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:25280000-25285200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:25280000-25285400	Weak transcription	Brain Angular Gyrus	brain
23	chr14:25280000-25285400	Weak transcription	HSMMtube	muscle
24	chr14:25280000-25285600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:25280000-25285600	Weak transcription	Brain Hippocampus Middle	brain
26	chr14:25280000-25286200	Weak transcription	Brain Substantia Nigra	brain
27	chr14:25280200-25284600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr14:25280600-25286400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr14:25280600-25286600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr14:25280800-25285800	Weak transcription	Brain Anterior Caudate	brain
31	chr14:25280800-25289200	Weak transcription	Fetal Stomach	stomach
32	chr14:25281800-25287400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:25282000-25284200	Enhancers	Stomach Mucosa	stomach
34	chr14:25282800-25284200	Enhancers	Pancreas	Pancrea
35	chr14:25282800-25285000	Genic enhancers	HepG2	liver
36	chr14:25282800-25285600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr14:25283000-25283800	Enhancers	Gastric	stomach
38	chr14:25283000-25284000	Enhancers	Small Intestine	intestine
39	chr14:25283000-25284800	Strong transcription	Fetal Lung	lung
40	chr14:25283000-25288600	Enhancers	Left Ventricle	heart
41	chr14:25283200-25283600	Flanking Active TSS	Liver	Liver
42	chr14:25283200-25283600	Flanking Active TSS	Duodenum Mucosa	Duodenum
43	chr14:25283200-25284800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr14:25283200-25285600	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links