Variant report

Variant	rs17108566
Chromosome Location	chr14:25296554-25296555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10483288	1.00[ASN][1000 genomes]
rs11850146	1.00[ASN][1000 genomes]
rs12878069	1.00[ASN][1000 genomes]
rs12879077	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12879323	1.00[ASN][1000 genomes]
rs12881201	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881381	1.00[ASN][1000 genomes]
rs12885468	1.00[ASN][1000 genomes]
rs12886050	1.00[ASN][1000 genomes]
rs12886059	1.00[ASN][1000 genomes]
rs12886766	1.00[ASN][1000 genomes]
rs12893363	1.00[ASN][1000 genomes]
rs12893496	1.00[ASN][1000 genomes]
rs12895258	1.00[ASN][1000 genomes]
rs12897835	1.00[ASN][1000 genomes]
rs1461645	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551775	1.00[ASN][1000 genomes]
rs17108738	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109263	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs17795652	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088325	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34164371	1.00[ASN][1000 genomes]
rs35779777	1.00[ASN][1000 genomes]
rs4097492	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4983020	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4983021	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4983025	1.00[ASN][1000 genomes]
rs71405872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018441	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs854340	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25285200-25302200	Weak transcription	HSMM	muscle
2	chr14:25285800-25297800	Weak transcription	HSMMtube	muscle
3	chr14:25286000-25296800	Weak transcription	Esophagus	oesophagus
4	chr14:25287400-25306200	Weak transcription	Brain Anterior Caudate	brain
5	chr14:25287800-25306800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:25288000-25309400	Weak transcription	Lung	lung
7	chr14:25288400-25304400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:25288400-25309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:25288600-25302200	Weak transcription	Left Ventricle	heart
10	chr14:25288600-25322800	Weak transcription	Placenta	Placenta
11	chr14:25288800-25308000	Weak transcription	Fetal Lung	lung
12	chr14:25288800-25317400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:25289200-25309400	Weak transcription	Pancreas	Pancrea
14	chr14:25290000-25300800	Weak transcription	HepG2	liver
15	chr14:25290800-25303200	Weak transcription	Right Ventricle	heart
16	chr14:25291600-25298000	Weak transcription	Fetal Intestine Large	intestine
17	chr14:25291600-25298200	Weak transcription	Fetal Intestine Small	intestine
18	chr14:25296200-25298200	Weak transcription	Gastric	stomach

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