Variant report

Variant	rs71405872
Chromosome Location	chr14:25288212-25288213
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10483288	1.00[ASN][1000 genomes]
rs11850146	1.00[ASN][1000 genomes]
rs12878069	1.00[ASN][1000 genomes]
rs12879077	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12879323	1.00[ASN][1000 genomes]
rs12881201	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881381	1.00[ASN][1000 genomes]
rs12885468	1.00[ASN][1000 genomes]
rs12886050	1.00[ASN][1000 genomes]
rs12886059	1.00[ASN][1000 genomes]
rs12886766	1.00[ASN][1000 genomes]
rs12893363	1.00[ASN][1000 genomes]
rs12893496	1.00[ASN][1000 genomes]
rs12895258	1.00[ASN][1000 genomes]
rs12897835	1.00[ASN][1000 genomes]
rs1461645	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551775	1.00[ASN][1000 genomes]
rs17108566	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108738	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109263	1.00[ASN][1000 genomes]
rs17795652	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34164371	1.00[ASN][1000 genomes]
rs35779777	1.00[ASN][1000 genomes]
rs4097492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4983020	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4983021	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4983025	1.00[ASN][1000 genomes]
rs8018441	1.00[ASN][1000 genomes]
rs854340	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv456169	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv564071	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25280800-25289200	Weak transcription	Fetal Stomach	stomach
2	chr14:25283000-25288600	Enhancers	Left Ventricle	heart
3	chr14:25284600-25289200	Enhancers	Pancreas	Pancrea
4	chr14:25284800-25288400	Enhancers	Right Atrium	heart
5	chr14:25284800-25288600	Genic enhancers	Fetal Lung	lung
6	chr14:25284800-25288800	Strong transcription	Placenta Amnion	Placenta Amnion
7	chr14:25285000-25288400	Flanking Active TSS	HepG2	liver
8	chr14:25285200-25288600	Enhancers	Fetal Heart	heart
9	chr14:25285200-25302200	Weak transcription	HSMM	muscle
10	chr14:25285800-25288600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:25285800-25297800	Weak transcription	HSMMtube	muscle
12	chr14:25286000-25296800	Weak transcription	Esophagus	oesophagus
13	chr14:25286200-25289200	Enhancers	Brain Substantia Nigra	brain
14	chr14:25286400-25288400	Enhancers	Brain Cingulate Gyrus	brain
15	chr14:25286400-25288400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr14:25286400-25288400	Enhancers	Fetal Muscle Leg	muscle
17	chr14:25286400-25288600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:25286400-25288800	Enhancers	Right Ventricle	heart
19	chr14:25286800-25288400	Strong transcription	Stomach Smooth Muscle	stomach
20	chr14:25286800-25288600	Enhancers	Fetal Muscle Trunk	muscle
21	chr14:25286800-25288800	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr14:25287000-25288400	Enhancers	Spleen	Spleen
23	chr14:25287200-25288400	Enhancers	Colonic Mucosa	Colon
24	chr14:25287200-25288400	Active TSS	Rectal Smooth Muscle	rectum
25	chr14:25287400-25288400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr14:25287400-25288400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:25287400-25288400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr14:25287400-25288600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:25287400-25306200	Weak transcription	Brain Anterior Caudate	brain
30	chr14:25287600-25288400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:25287600-25288400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
32	chr14:25287600-25288400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
33	chr14:25287600-25290200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr14:25287800-25292200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr14:25287800-25306800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:25288000-25288400	Enhancers	Liver	Liver
37	chr14:25288000-25288400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr14:25288000-25288600	Genic enhancers	Fetal Intestine Small	intestine
39	chr14:25288000-25291600	Enhancers	Fetal Intestine Large	intestine
40	chr14:25288000-25309400	Weak transcription	Lung	lung
41	chr14:25288200-25288400	Weak transcription	Placenta	Placenta

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