Variant report

Variant	rs12890167
Chromosome Location	chr14:68769516-68769517
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68764415..68769564-chr14:68770855..68774967,6	MCF-7	breast:
2	chr14:68765970..68770223-chr14:69260401..69262573,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10141370	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1028577	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10483807	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1108590	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158728	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11158729	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158730	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11626138	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11626195	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11627646	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11628825	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11628890	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11628954	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12878627	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12878858	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12880109	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12880842	0.98[EUR][1000 genomes]
rs12881502	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12883719	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12884901	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12885750	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12886238	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12889949	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12890110	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12890124	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12892777	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12896939	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1956524	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1956525	0.95[EUR][1000 genomes]
rs1956526	0.91[EUR][1000 genomes]
rs1956528	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1956529	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1956532	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2013413	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2064911	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2064912	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2145422	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2145423	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2180769	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2180770	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2877455	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784104	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784108	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3784109	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3825730	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61985135	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs61985136	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7146850	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7147852	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7148073	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7150988	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7155473	0.92[EUR][1000 genomes]
rs7158493	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8017304	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs911254	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68760400-68776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68760600-68773600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:68762000-68773400	Weak transcription	Small Intestine	intestine
4	chr14:68762800-68771400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr14:68763400-68772400	Weak transcription	Pancreas	Pancrea
6	chr14:68765000-68774600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:68765200-68771000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:68767600-68776400	Weak transcription	Left Ventricle	heart
9	chr14:68768000-68771000	Weak transcription	Fetal Heart	heart
10	chr14:68768200-68772600	Weak transcription	Ovary	ovary
11	chr14:68768800-68770000	ZNF genes & repeats	Fetal Muscle Leg	muscle
12	chr14:68769000-68769600	Weak transcription	A549	lung
13	chr14:68769000-68773400	Weak transcription	Aorta	Aorta
14	chr14:68769000-68776400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:68769200-68771000	Weak transcription	Fetal Lung	lung
17	chr14:68769200-68771800	Weak transcription	Primary B cells from cord blood	blood
18	chr14:68769200-68773400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:68769200-68774000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr14:68769200-68774200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:68769400-68772600	Weak transcription	Fetal Thymus	thymus

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