Variant report

Variant	rs2877455
Chromosome Location	chr14:68760986-68760987
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68759580..68761142-chr14:68771842..68774363,2	MCF-7	breast:
2	chr14:68716325..68719103-chr14:68757433..68761699,4	MCF-7	breast:
3	chr14:68750225..68753988-chr14:68760767..68763895,3	K562	blood:
4	chr14:68760208..68761928-chr14:69260094..69262955,2	K562	blood:
5	chr14:68760176..68762768-chr14:69258282..69260284,2	MCF-7	breast:
6	chr14:68729921..68731591-chr14:68760748..68763358,2	MCF-7	breast:
7	chr14:68760897..68764007-chr14:68767297..68769142,3	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10141370	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1028577	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10483807	0.96[CEU][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1108590	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158728	1.00[CEU][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11158729	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158730	0.96[CEU][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11626138	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11626195	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11627646	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11628825	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11628890	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11628954	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12878627	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12878858	0.96[CEU][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12880109	0.96[CEU][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12880842	0.98[EUR][1000 genomes]
rs12881502	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12883719	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12884901	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12885750	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12886238	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12889949	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12890110	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12890124	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12890167	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12892777	0.96[CEU][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12896939	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1956524	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1956525	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs1956526	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1956528	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1956529	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1956532	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2013413	0.92[CEU][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2064911	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2064912	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2145422	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2145423	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2180769	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2180770	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784104	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784108	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3784109	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3825730	0.96[CEU][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61985135	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61985136	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7146850	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7147852	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7148073	0.89[CEU][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7150988	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7155473	0.95[EUR][1000 genomes]
rs7158493	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8017304	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs911254	0.96[CEU][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68746600-68764600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68750400-68761200	Weak transcription	Pancreas	Pancrea
3	chr14:68750800-68761800	Weak transcription	Left Ventricle	heart
4	chr14:68752400-68761600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:68752400-68765000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:68752400-68768800	Weak transcription	Aorta	Aorta
7	chr14:68752600-68761600	Weak transcription	Spleen	Spleen
8	chr14:68752600-68763800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:68753400-68768800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:68753600-68768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:68753600-68768800	Weak transcription	Dnd41	blood
12	chr14:68756400-68763400	Enhancers	Primary B cells from peripheral blood	blood
13	chr14:68756600-68765200	Enhancers	Fetal Intestine Small	intestine
14	chr14:68757800-68765200	Enhancers	Fetal Intestine Large	intestine
15	chr14:68758000-68761800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:68758200-68761200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr14:68758200-68761800	Enhancers	HepG2	liver
18	chr14:68758200-68762200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr14:68758200-68762800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr14:68758200-68762800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr14:68758200-68762800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr14:68758200-68763000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr14:68758200-68763000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr14:68758200-68765600	Enhancers	Primary T cells from cord blood	blood
25	chr14:68758400-68762200	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr14:68758400-68762400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:68758400-68762600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr14:68758400-68762600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:68758400-68763600	Enhancers	Colon Smooth Muscle	Colon
30	chr14:68758400-68765600	Enhancers	Fetal Kidney	kidney
31	chr14:68758400-68765600	Enhancers	Fetal Muscle Leg	muscle
32	chr14:68758600-68765200	Enhancers	Fetal Lung	lung
33	chr14:68758800-68761600	Weak transcription	Gastric	stomach
34	chr14:68759000-68761800	Weak transcription	Psoas Muscle	Psoas
35	chr14:68759000-68762000	Weak transcription	NHLF	lung
36	chr14:68759000-68768400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr14:68759600-68761000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr14:68759600-68761800	Weak transcription	Lung	lung
39	chr14:68759600-68762000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:68759600-68762200	Weak transcription	Brain Anterior Caudate	brain
41	chr14:68759600-68762800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:68759600-68763400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:68759800-68761600	Weak transcription	Placenta	Placenta
44	chr14:68760000-68761600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr14:68760000-68768800	Weak transcription	Thymus	Thymus
46	chr14:68760200-68761000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:68760200-68761600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr14:68760200-68763600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:68760400-68761200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr14:68760400-68761200	Weak transcription	Small Intestine	intestine

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