Variant report

Variant	rs7155473
Chromosome Location	chr14:68757759-68757760
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68756682..68758225-chr14:68773128..68775956,2	MCF-7	breast:
2	chr14:68716325..68719103-chr14:68757433..68761699,4	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10141370	0.91[EUR][1000 genomes]
rs1028577	0.85[EUR][1000 genomes]
rs10483807	0.87[EUR][1000 genomes]
rs1108590	0.92[EUR][1000 genomes]
rs11158728	0.95[EUR][1000 genomes]
rs11158729	0.92[EUR][1000 genomes]
rs11158730	0.87[EUR][1000 genomes]
rs11626138	0.91[EUR][1000 genomes]
rs11626195	0.92[EUR][1000 genomes]
rs11627646	0.88[EUR][1000 genomes]
rs11628825	0.92[EUR][1000 genomes]
rs11628890	0.91[EUR][1000 genomes]
rs11628954	0.92[EUR][1000 genomes]
rs12878627	0.91[EUR][1000 genomes]
rs12878858	0.90[EUR][1000 genomes]
rs12880109	0.87[EUR][1000 genomes]
rs12880842	0.93[EUR][1000 genomes]
rs12881502	0.91[EUR][1000 genomes]
rs12883719	0.89[EUR][1000 genomes]
rs12884901	0.90[EUR][1000 genomes]
rs12885750	0.92[EUR][1000 genomes]
rs12886238	0.91[EUR][1000 genomes]
rs12889949	0.92[EUR][1000 genomes]
rs12890110	0.93[EUR][1000 genomes]
rs12890124	0.93[EUR][1000 genomes]
rs12890167	0.92[EUR][1000 genomes]
rs12892777	0.91[EUR][1000 genomes]
rs12896939	0.87[EUR][1000 genomes]
rs1956524	0.90[EUR][1000 genomes]
rs1956525	0.89[EUR][1000 genomes]
rs1956526	0.86[EUR][1000 genomes]
rs1956528	0.91[EUR][1000 genomes]
rs1956529	0.91[EUR][1000 genomes]
rs1956532	0.91[EUR][1000 genomes]
rs2013413	0.87[EUR][1000 genomes]
rs2064911	0.88[EUR][1000 genomes]
rs2064912	0.88[EUR][1000 genomes]
rs2145422	0.91[EUR][1000 genomes]
rs2145423	0.91[EUR][1000 genomes]
rs2180769	0.89[EUR][1000 genomes]
rs2180770	0.94[EUR][1000 genomes]
rs2877455	0.95[EUR][1000 genomes]
rs3784104	0.94[EUR][1000 genomes]
rs3784108	0.91[EUR][1000 genomes]
rs3784109	0.91[EUR][1000 genomes]
rs3825730	0.90[EUR][1000 genomes]
rs61985135	0.91[EUR][1000 genomes]
rs61985136	0.92[EUR][1000 genomes]
rs7140939	0.91[ASN][1000 genomes]
rs7146850	0.91[EUR][1000 genomes]
rs7147852	0.91[EUR][1000 genomes]
rs7148073	0.91[EUR][1000 genomes]
rs7150988	0.92[EUR][1000 genomes]
rs7158493	0.88[EUR][1000 genomes]
rs8017304	0.91[EUR][1000 genomes]
rs911254	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68746000-68758600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr14:68746600-68764600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:68750400-68758400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:68750400-68761200	Weak transcription	Pancreas	Pancrea
5	chr14:68750600-68758000	Weak transcription	Lung	lung
6	chr14:68750600-68758400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:68750600-68758600	Weak transcription	Psoas Muscle	Psoas
8	chr14:68750600-68759600	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:68750800-68758200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr14:68750800-68761800	Weak transcription	Left Ventricle	heart
11	chr14:68751400-68758200	Weak transcription	HepG2	liver
12	chr14:68751800-68758600	Weak transcription	Right Atrium	heart
13	chr14:68752200-68759200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:68752400-68758000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:68752400-68758200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:68752400-68758600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:68752400-68761600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:68752400-68765000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:68752400-68768800	Weak transcription	Aorta	Aorta
20	chr14:68752600-68758400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:68752600-68758600	Weak transcription	Fetal Stomach	stomach
22	chr14:68752600-68761600	Weak transcription	Spleen	Spleen
23	chr14:68752600-68763800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:68753000-68758400	Weak transcription	Colon Smooth Muscle	Colon
25	chr14:68753200-68758200	Weak transcription	K562	blood
26	chr14:68753400-68768800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:68753600-68758800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr14:68753600-68768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:68753600-68768800	Weak transcription	Dnd41	blood
30	chr14:68753800-68758600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:68754000-68758000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr14:68754000-68758600	Weak transcription	Fetal Thymus	thymus
33	chr14:68754000-68759000	Weak transcription	Thymus	Thymus
34	chr14:68754000-68760200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:68754400-68758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr14:68754600-68758000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:68754600-68758400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr14:68755200-68758200	Weak transcription	Primary T cells from cord blood	blood
39	chr14:68755200-68758200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr14:68755200-68758200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr14:68755400-68758000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr14:68755400-68758200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr14:68755400-68758200	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr14:68755400-68758600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr14:68755400-68759000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr14:68755600-68758400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:68756400-68763400	Enhancers	Primary B cells from peripheral blood	blood
48	chr14:68756600-68759600	Enhancers	Primary B cells from cord blood	blood
49	chr14:68756600-68765200	Enhancers	Fetal Intestine Small	intestine
50	chr14:68756800-68758400	Weak transcription	GM12878-XiMat	blood

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