Variant report

Variant	rs12896939
Chromosome Location	chr14:68812662-68812663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10141370	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1028577	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10483807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1108590	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11158728	0.92[EUR][1000 genomes]
rs11158729	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11158730	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626138	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11626195	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11627646	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11628825	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11628890	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11628954	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12878627	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12878858	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12880109	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12880842	0.91[EUR][1000 genomes]
rs12881502	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12883719	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12884901	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12885750	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12886238	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12889949	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12890110	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12890124	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12890167	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12892777	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1956524	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1956525	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1956526	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1956528	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1956529	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1956532	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2013413	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2064911	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2064912	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2145422	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2145423	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2180769	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2180770	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2877455	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3784104	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3784108	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3784109	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3825730	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61985135	0.93[EUR][1000 genomes]
rs61985136	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7146850	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7147852	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7148073	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7150988	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7155473	0.87[EUR][1000 genomes]
rs7158493	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8017304	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs911254	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68804000-68813400	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:68804400-68812800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:68808600-68819200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68808800-68813000	Weak transcription	Brain Anterior Caudate	brain
5	chr14:68808800-68813000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:68809000-68816400	Weak transcription	Fetal Intestine Large	intestine
7	chr14:68809200-68813200	Weak transcription	Small Intestine	intestine
8	chr14:68809400-68813200	Weak transcription	Primary B cells from cord blood	blood
9	chr14:68810600-68813000	Weak transcription	Fetal Lung	lung
10	chr14:68810800-68813000	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:68811000-68813200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr14:68811000-68813600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:68811000-68816400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr14:68811800-68816400	Weak transcription	Fetal Brain Male	brain
16	chr14:68812000-68814400	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr14:68812200-68814800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:68812400-68812800	Enhancers	Fetal Muscle Trunk	muscle
19	chr14:68812400-68813000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:68812400-68813200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:68812400-68813200	Weak transcription	Fetal Muscle Leg	muscle
22	chr14:68812400-68813400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:68812400-68814000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr14:68812400-68814800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr14:68812400-68818600	Enhancers	Fetal Stomach	stomach

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