Variant report

Variant	rs12897126
Chromosome Location	chr14:81472456-81472457
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1003150	1.00[ASN][1000 genomes]
rs11159480	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111140	1.00[ASN][1000 genomes]
rs179244	1.00[ASN][1000 genomes]
rs179250	1.00[ASN][1000 genomes]
rs179253	1.00[ASN][1000 genomes]
rs179256	1.00[ASN][1000 genomes]
rs179258	1.00[ASN][1000 genomes]
rs179259	1.00[ASN][1000 genomes]
rs179260	1.00[ASN][1000 genomes]
rs179261	1.00[ASN][1000 genomes]
rs2024428	1.00[ASN][1000 genomes]
rs28699303	1.00[ASN][1000 genomes]
rs59549907	1.00[ASN][1000 genomes]
rs61738571	1.00[ASN][1000 genomes]
rs7143071	1.00[ASN][1000 genomes]
rs7145701	1.00[ASN][1000 genomes]
rs7148630	0.88[EUR][1000 genomes]
rs7155069	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726019	1.00[ASN][1000 genomes]
rs73344664	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv2169207	chr14:81472456-81472457	Enhancers Weak transcription	TF binding region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81455800-81492200	Weak transcription	Fetal Thymus	thymus
2	chr14:81468000-81486600	Weak transcription	Thymus	Thymus
3	chr14:81468400-81472600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:81470400-81477200	Weak transcription	Dnd41	blood
5	chr14:81470800-81474800	Enhancers	K562	blood
6	chr14:81471400-81472800	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links