Variant report

Variant	rs179259
Chromosome Location	chr14:81441353-81441354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81432696..81434242-chr14:81439337..81441996,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1003150	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11159480	1.00[ASN][1000 genomes]
rs11625251	0.83[CEU][hapmap]
rs12897126	1.00[ASN][1000 genomes]
rs17111140	1.00[ASN][1000 genomes]
rs179244	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179250	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179253	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179256	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179258	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179260	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179261	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024428	0.91[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28699303	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59549907	1.00[ASN][1000 genomes]
rs61738571	1.00[ASN][1000 genomes]
rs7143071	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145701	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155069	1.00[ASN][1000 genomes]
rs726019	0.83[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344664	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81434000-81442600	Genic enhancers	Dnd41	blood
2	chr14:81438800-81442000	Enhancers	Fetal Brain Male	brain
3	chr14:81439000-81442200	Enhancers	Brain Germinal Matrix	brain
4	chr14:81439000-81442400	Enhancers	Placenta	Placenta
5	chr14:81439200-81442000	Enhancers	Rectal Smooth Muscle	rectum
6	chr14:81439800-81441800	Enhancers	Brain Cingulate Gyrus	brain
7	chr14:81439800-81442000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:81439800-81442200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:81439800-81442200	Enhancers	Fetal Kidney	kidney
10	chr14:81440000-81441600	Enhancers	Brain Anterior Caudate	brain
11	chr14:81440000-81442200	Enhancers	Colon Smooth Muscle	Colon
12	chr14:81440000-81443200	Enhancers	Adipose Nuclei	Adipose
13	chr14:81440200-81441400	Enhancers	Fetal Brain Female	brain
14	chr14:81440200-81441400	Enhancers	HSMMtube	muscle
15	chr14:81440200-81441600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr14:81440200-81441800	Enhancers	Brain Hippocampus Middle	brain
17	chr14:81440200-81442000	Enhancers	Brain Angular Gyrus	brain
18	chr14:81440400-81441400	Enhancers	Osteobl	bone
19	chr14:81440600-81441400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr14:81440600-81442200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:81440600-81443800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:81440600-81444200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr14:81440600-81444600	Weak transcription	Primary T cells from cord blood	blood
24	chr14:81440800-81442000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:81440800-81442400	Weak transcription	Psoas Muscle	Psoas
26	chr14:81440800-81442600	Enhancers	Thymus	Thymus
27	chr14:81440800-81444600	Weak transcription	Fetal Muscle Leg	muscle
28	chr14:81441000-81442000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:81441000-81443800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr14:81441200-81441400	Flanking Active TSS	Fetal Thymus	thymus
31	chr14:81441200-81441400	Bivalent Enhancer	NHDF-Ad	bronchial
32	chr14:81441200-81441800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:81441200-81441800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links