Variant report

Variant	rs179260
Chromosome Location	chr14:81442055-81442056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1003150	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11159480	1.00[ASN][1000 genomes]
rs11625251	0.91[CEU][hapmap]
rs12897126	1.00[ASN][1000 genomes]
rs17111140	1.00[ASN][1000 genomes]
rs179244	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179250	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179253	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179256	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179258	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179259	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179261	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024428	1.00[CEU][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28699303	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59549907	1.00[ASN][1000 genomes]
rs61738571	1.00[ASN][1000 genomes]
rs7143071	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145701	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155069	1.00[ASN][1000 genomes]
rs726019	0.91[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344664	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761847	chr14:81392124-81453137	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
3	nsv456346	chr14:81399692-81448382	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
4	nsv565291	chr14:81399692-81448382	Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81434000-81442600	Genic enhancers	Dnd41	blood
2	chr14:81439000-81442200	Enhancers	Brain Germinal Matrix	brain
3	chr14:81439000-81442400	Enhancers	Placenta	Placenta
4	chr14:81439800-81442200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:81439800-81442200	Enhancers	Fetal Kidney	kidney
6	chr14:81440000-81442200	Enhancers	Colon Smooth Muscle	Colon
7	chr14:81440000-81443200	Enhancers	Adipose Nuclei	Adipose
8	chr14:81440600-81442200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr14:81440600-81443800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:81440600-81444200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr14:81440600-81444600	Weak transcription	Primary T cells from cord blood	blood
12	chr14:81440800-81442400	Weak transcription	Psoas Muscle	Psoas
13	chr14:81440800-81442600	Enhancers	Thymus	Thymus
14	chr14:81440800-81444600	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:81441000-81443800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr14:81441400-81444400	Enhancers	Fetal Thymus	thymus
17	chr14:81441800-81442200	Enhancers	Liver	Liver
18	chr14:81441800-81444000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr14:81442000-81442200	Enhancers	Brain Anterior Caudate	brain
20	chr14:81442000-81443000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:81442000-81443600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:81442000-81444200	Weak transcription	Fetal Brain Male	brain
23	chr14:81442000-81446000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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