Variant report

Variant	rs12899937
Chromosome Location	chr15:49124404-49124405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12902606	1.00[ASN][1000 genomes]
rs12906456	0.85[ASN][1000 genomes]
rs1426199	0.87[ASN][1000 genomes]
rs17382306	0.93[ASN][1000 genomes]
rs17382534	0.85[ASN][1000 genomes]
rs17466389	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2899424	0.98[ASN][1000 genomes]
rs34026160	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34780506	0.87[ASN][1000 genomes]
rs35744700	1.00[ASN][1000 genomes]
rs4482220	0.98[ASN][1000 genomes]
rs62009451	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833001	chr15:49043643-49204765	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49113400-49124600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:49115800-49125400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:49116000-49124800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:49117400-49125400	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:49117800-49124800	Weak transcription	Brain Angular Gyrus	brain
6	chr15:49119000-49125400	Weak transcription	Aorta	Aorta
7	chr15:49121800-49131400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:49123000-49124600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:49124200-49125600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:49124400-49125600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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