Variant report

Variant	rs1426199
Chromosome Location	chr15:49127134-49127135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10775138	1.00[ASW][hapmap]
rs12899937	0.87[ASN][1000 genomes]
rs12902606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs12906456	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs12909029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs17382306	0.85[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17382534	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs17383295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17383671	1.00[ASW][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17466389	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2899424	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs34026160	0.87[ASN][1000 genomes]
rs34780506	1.00[ASN][1000 genomes]
rs35706368	0.90[ASN][1000 genomes]
rs35744700	0.87[ASN][1000 genomes]
rs4482220	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs56026819	0.90[ASN][1000 genomes]
rs56287415	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62009451	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833001	chr15:49043643-49204765	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv3426007	chr15:49126972-49127258	Genic enhancers Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49121800-49131400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:49125600-49128000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:49125800-49128800	Weak transcription	Brain Angular Gyrus	brain
4	chr15:49125800-49133600	Weak transcription	Fetal Stomach	stomach
5	chr15:49125800-49143000	Weak transcription	Psoas Muscle	Psoas
6	chr15:49126000-49127400	Strong transcription	Aorta	Aorta
7	chr15:49126000-49128000	Weak transcription	Left Ventricle	heart
8	chr15:49126000-49129200	Weak transcription	Brain Substantia Nigra	brain
9	chr15:49126000-49144800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:49126200-49129400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:49126400-49129200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:49126400-49131200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:49126400-49133600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:49126800-49127200	Strong transcription	Brain Cingulate Gyrus	brain
15	chr15:49126800-49129000	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:49127000-49127200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:49127000-49128400	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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