Variant report

Variant	rs17383295
Chromosome Location	chr15:49178572-49178573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12902606	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12906456	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12909029	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17382306	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17382534	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17383671	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17466389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2899424	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs34780506	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34805202	0.87[ASN][1000 genomes]
rs35706368	1.00[ASN][1000 genomes]
rs4482220	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs56026819	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287415	1.00[ASN][1000 genomes]
rs62009451	0.90[ASN][1000 genomes]
rs7183535	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833001	chr15:49043643-49204765	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49171000-49185800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:49171400-49180400	Weak transcription	HSMM	muscle
3	chr15:49172600-49180000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:49172600-49181200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:49172600-49183400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:49172600-49189000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:49172800-49179000	Weak transcription	A549	lung
8	chr15:49172800-49179400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:49172800-49179400	Weak transcription	HMEC	breast
10	chr15:49173000-49179000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:49173000-49180800	Weak transcription	NH-A	brain
12	chr15:49173400-49178600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:49176400-49188000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:49177200-49181000	Weak transcription	K562	blood
15	chr15:49178200-49180400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:49178200-49180800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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