Variant report

Variant	rs2899424
Chromosome Location	chr15:49104986-49104987
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12899937	0.98[ASN][1000 genomes]
rs12902606	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12906456	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs12909029	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1426199	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs17382306	0.80[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17382534	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs17383295	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17383671	1.00[JPT][hapmap]
rs17466389	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs34026160	0.98[ASN][1000 genomes]
rs34780506	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35744700	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4482220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62009451	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833001	chr15:49043643-49204765	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49104000-49106400	Weak transcription	Osteobl	bone
2	chr15:49104000-49124400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:49104200-49106400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:49104200-49106400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:49104200-49112200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:49104200-49113400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:49104200-49115400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:49104200-49115400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:49104400-49106200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:49104400-49117000	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:49104400-49121200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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