Variant report

Variant	rs12909029
Chromosome Location	chr15:49147115-49147116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49096533..49099191-chr15:49145704..49147448,2	K562	blood:
2	chr15:49142203..49145708-chr15:49146118..49148396,4	K562	blood:
3	chr15:49142203..49144495-chr15:49146118..49149143,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12902606	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12906456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1426199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs17382306	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17382534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17383295	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17383671	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17466389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2899424	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs34780506	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34805202	0.87[ASN][1000 genomes]
rs35706368	1.00[ASN][1000 genomes]
rs4482220	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs56026819	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287415	1.00[ASN][1000 genomes]
rs62009451	0.90[ASN][1000 genomes]
rs7183535	0.84[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833001	chr15:49043643-49204765	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49127200-49166600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:49129400-49147600	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:49129400-49148000	Weak transcription	Brain Angular Gyrus	brain
4	chr15:49131800-49147600	Weak transcription	Right Ventricle	heart
5	chr15:49132200-49150400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:49132600-49149000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:49133800-49147200	Weak transcription	Fetal Stomach	stomach
8	chr15:49136200-49147800	Weak transcription	Aorta	Aorta
9	chr15:49137000-49147800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:49139000-49147800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:49139200-49147800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:49140600-49148200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:49142200-49147600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:49142200-49147600	Weak transcription	Fetal Kidney	kidney
15	chr15:49143800-49147800	Weak transcription	Psoas Muscle	Psoas
16	chr15:49144600-49147600	Weak transcription	K562	blood
17	chr15:49145600-49147600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:49146400-49147600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:49146800-49147800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:49147000-49147600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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