Variant report

Variant	rs35706368
Chromosome Location	chr15:49158705-49158706
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49156517..49159205-chr15:49168658..49170855,2	K562	blood:
2	chr15:49156978..49160033-chr15:49160466..49163281,3	MCF-7	breast:
3	chr15:49157315..49161689-chr15:49254673..49257983,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235883	Chromatin interaction
ENSG00000255302	Chromatin interaction
ENSG00000185634	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12906456	0.93[ASN][1000 genomes]
rs12909029	1.00[ASN][1000 genomes]
rs1426199	0.90[ASN][1000 genomes]
rs17382306	0.84[ASN][1000 genomes]
rs17382534	0.93[ASN][1000 genomes]
rs17383295	1.00[ASN][1000 genomes]
rs17383671	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34780506	0.90[ASN][1000 genomes]
rs34805202	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56026819	1.00[ASN][1000 genomes]
rs56287415	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62009451	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833001	chr15:49043643-49204765	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49127200-49166600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:49148200-49166400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:49148200-49166400	Weak transcription	Brain Substantia Nigra	brain
4	chr15:49148400-49166600	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:49148600-49160000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:49148600-49169800	Weak transcription	Aorta	Aorta
7	chr15:49153600-49163400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:49155200-49158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:49157000-49165200	Enhancers	Hela-S3	cervix
10	chr15:49157200-49158800	Enhancers	Colon Smooth Muscle	Colon
11	chr15:49157200-49158800	Enhancers	Fetal Stomach	stomach
12	chr15:49157200-49160400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:49157400-49158800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:49157400-49158800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:49157400-49158800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:49157400-49158800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr15:49157400-49159000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:49157400-49159000	Enhancers	NH-A	brain
19	chr15:49157400-49159400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:49157400-49159400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:49157400-49161200	Enhancers	NHDF-Ad	bronchial
22	chr15:49157400-49161200	Enhancers	NHLF	lung
23	chr15:49157600-49158800	Enhancers	HSMM	muscle
24	chr15:49157600-49158800	Enhancers	HUVEC	blood vessel
25	chr15:49157600-49169800	Weak transcription	Left Ventricle	heart
26	chr15:49157800-49158800	Enhancers	HSMMtube	muscle
27	chr15:49157800-49159000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr15:49157800-49159000	Enhancers	Fetal Lung	lung
29	chr15:49157800-49159200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:49158000-49159200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:49158000-49159600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:49158200-49158800	Enhancers	HMEC	breast
33	chr15:49158200-49162600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:49158400-49158800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:49158600-49159000	Enhancers	Osteobl	bone
36	chr15:49158600-49159600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:49158600-49160800	Weak transcription	A549	lung
38	chr15:49158600-49167400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:49158600-49170000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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