Variant report

Variant	rs34780506
Chromosome Location	chr15:49132074-49132075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12899937	0.87[ASN][1000 genomes]
rs12902606	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12906456	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12909029	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1426199	1.00[ASN][1000 genomes]
rs17382306	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17382534	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17383295	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17466389	0.87[ASN][1000 genomes]
rs2899424	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34026160	0.87[ASN][1000 genomes]
rs35706368	0.90[ASN][1000 genomes]
rs35744700	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4482220	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56026819	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56287415	0.90[ASN][1000 genomes]
rs62009451	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833001	chr15:49043643-49204765	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49125800-49133600	Weak transcription	Fetal Stomach	stomach
2	chr15:49125800-49143000	Weak transcription	Psoas Muscle	Psoas
3	chr15:49126000-49144800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:49126400-49133600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:49127200-49166600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:49127400-49133600	Weak transcription	Aorta	Aorta
7	chr15:49129400-49136600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:49129400-49137400	Weak transcription	Brain Substantia Nigra	brain
9	chr15:49129400-49139200	Weak transcription	Brain Anterior Caudate	brain
10	chr15:49129400-49147600	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:49129400-49148000	Weak transcription	Brain Angular Gyrus	brain
12	chr15:49131200-49132600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:49131400-49132200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:49131400-49132400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:49131600-49137400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:49131800-49133800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:49131800-49134800	Weak transcription	Pancreas	Pancrea
18	chr15:49131800-49147600	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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