Variant report

Variant	rs12901093
Chromosome Location	chr15:74520140-74520141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74519618..74521200-chr15:74525359..74527344,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11632233	0.87[JPT][hapmap]
rs11633101	0.81[JPT][hapmap]
rs11639316	0.88[JPT][hapmap]
rs11858661	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs11858677	0.84[ASN][1000 genomes]
rs12913651	0.87[JPT][hapmap]
rs168432	0.81[JPT][hapmap]
rs16966903	0.84[CHB][hapmap];0.87[YRI][hapmap]
rs2627305	0.83[ASN][1000 genomes]
rs351152	0.83[ASN][1000 genomes]
rs351154	0.84[ASN][1000 genomes]
rs351155	0.84[ASN][1000 genomes]
rs351159	0.85[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs351160	0.80[ASN][1000 genomes]
rs351170	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs351172	0.98[ASN][1000 genomes]
rs351175	0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs351178	0.88[JPT][hapmap]
rs368416	0.88[JPT][hapmap]
rs3843700	0.90[ASN][1000 genomes]
rs3848162	0.81[JPT][hapmap]
rs3848164	0.81[ASN][1000 genomes]
rs392267	0.88[JPT][hapmap]
rs61327819	0.84[ASN][1000 genomes]
rs62003670	0.83[ASN][1000 genomes]
rs6495091	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs748608	0.89[CHB][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs876703	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74506600-74520400	Weak transcription	Left Ventricle	heart
2	chr15:74512200-74522600	Enhancers	Fetal Brain Male	brain
3	chr15:74515400-74522400	Enhancers	Fetal Brain Female	brain
4	chr15:74516400-74520400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:74517000-74520400	Weak transcription	Fetal Lung	lung
6	chr15:74517400-74520200	Weak transcription	Fetal Heart	heart
7	chr15:74517400-74520800	Weak transcription	NH-A	brain
8	chr15:74517600-74520400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:74517600-74520400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:74518400-74520200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:74518400-74520200	Weak transcription	Fetal Stomach	stomach
12	chr15:74518400-74521200	Weak transcription	Spleen	Spleen
13	chr15:74518600-74520400	Weak transcription	Fetal Thymus	thymus
14	chr15:74518800-74520200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:74518800-74520200	Weak transcription	Brain Germinal Matrix	brain
16	chr15:74518800-74520400	Weak transcription	Right Ventricle	heart
17	chr15:74518800-74520600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:74518800-74520800	Weak transcription	Lung	lung
19	chr15:74519200-74521600	Enhancers	Colonic Mucosa	Colon
20	chr15:74519400-74521000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
21	chr15:74519600-74520800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr15:74519600-74521400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:74519600-74521600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
24	chr15:74519800-74520200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:74519800-74521000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
26	chr15:74519800-74521400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:74519800-74521400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr15:74519800-74522600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr15:74520000-74521000	Enhancers	H9 Cell Line	embryonic stem cell
30	chr15:74520000-74521400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
31	chr15:74520000-74521400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:74520000-74524000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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