Variant report

Variant	rs351154
Chromosome Location	chr15:74534362-74534363
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74508820..74512386-chr15:74531796..74535260,3	MCF-7	breast:
2	chr15:74531244..74533706-chr15:74533938..74535590,2	K562	blood:
3	chr15:74526641..74528980-chr15:74533279..74535545,2	K562	blood:

Variant related genes	Relation type
ENSG00000140481	Chromatin interaction
ENSG00000259264	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11858661	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858677	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901093	0.84[ASN][1000 genomes]
rs12905224	0.85[AFR][1000 genomes]
rs168432	0.88[AFR][1000 genomes]
rs2627305	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs351152	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs351155	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351159	0.91[ASN][1000 genomes]
rs351160	0.96[ASN][1000 genomes]
rs351170	0.83[ASN][1000 genomes]
rs351172	0.86[ASN][1000 genomes]
rs351175	0.88[ASN][1000 genomes]
rs3843700	0.92[ASN][1000 genomes]
rs3848163	0.81[ASN][1000 genomes]
rs3848164	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58029965	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61327819	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62003670	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6495091	0.87[ASN][1000 genomes]
rs876703	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74528600-74536800	Weak transcription	Fetal Thymus	thymus
2	chr15:74529200-74535400	Weak transcription	Fetal Kidney	kidney
3	chr15:74530800-74535800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:74531000-74535400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:74531000-74535600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:74531000-74536000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:74531000-74536000	Enhancers	Fetal Brain Male	brain
8	chr15:74531000-74536200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr15:74531200-74534600	Enhancers	Fetal Muscle Leg	muscle
10	chr15:74531200-74535200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:74531400-74535600	Enhancers	Stomach Mucosa	stomach
12	chr15:74531400-74535800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr15:74531400-74536000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:74531400-74536000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:74531400-74536000	Enhancers	Brain Germinal Matrix	brain
16	chr15:74531400-74537600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:74531600-74535400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr15:74531600-74535600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:74531600-74535600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:74531600-74535800	Enhancers	Fetal Brain Female	brain
21	chr15:74531600-74537000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr15:74531600-74538400	Enhancers	Spleen	Spleen
23	chr15:74531800-74535400	Enhancers	Right Atrium	heart
24	chr15:74531800-74535600	Enhancers	Fetal Heart	heart
25	chr15:74531800-74535600	Enhancers	Right Ventricle	heart
26	chr15:74531800-74535600	Enhancers	NHDF-Ad	bronchial
27	chr15:74531800-74535800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:74532000-74534800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:74532000-74535200	Enhancers	Adipose Nuclei	Adipose
30	chr15:74532000-74535400	Enhancers	HMEC	breast
31	chr15:74532000-74536000	Enhancers	Fetal Intestine Small	intestine
32	chr15:74532200-74535200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:74532400-74537600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:74532600-74535600	Enhancers	Stomach Smooth Muscle	stomach
35	chr15:74532600-74537600	Weak transcription	GM12878-XiMat	blood
36	chr15:74532800-74534600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:74532800-74534800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr15:74532800-74534800	Weak transcription	Fetal Lung	lung
39	chr15:74532800-74534800	Weak transcription	Ovary	ovary
40	chr15:74532800-74535400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:74532800-74543200	Weak transcription	Psoas Muscle	Psoas
42	chr15:74533000-74534400	Weak transcription	HSMMtube	muscle
43	chr15:74533000-74534600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr15:74533000-74534800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:74533000-74534800	Weak transcription	HSMM	muscle
46	chr15:74533000-74535200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr15:74533000-74535800	Enhancers	A549	lung
48	chr15:74533000-74537200	Weak transcription	Brain Anterior Caudate	brain
49	chr15:74533000-74537400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:74533000-74537400	Weak transcription	Brain Substantia Nigra	brain

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