Variant report

Variant	rs3848164
Chromosome Location	chr15:74541803-74541804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11858661	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11858677	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12901093	0.81[ASN][1000 genomes]
rs2627305	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs351152	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs351154	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs351155	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs351159	0.89[ASN][1000 genomes]
rs351160	0.94[ASN][1000 genomes]
rs351170	0.80[ASN][1000 genomes]
rs351172	0.83[ASN][1000 genomes]
rs351175	0.85[ASN][1000 genomes]
rs3843700	0.89[ASN][1000 genomes]
rs58029965	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61327819	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62003670	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495091	0.84[ASN][1000 genomes]
rs876703	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74532800-74543200	Weak transcription	Psoas Muscle	Psoas
2	chr15:74535400-74542200	Weak transcription	Right Atrium	heart
3	chr15:74535600-74542200	Weak transcription	HSMMtube	muscle
4	chr15:74535600-74543800	Weak transcription	Right Ventricle	heart
5	chr15:74538000-74542800	Weak transcription	Pancreas	Pancrea
6	chr15:74538000-74543400	Weak transcription	Gastric	stomach
7	chr15:74538400-74542000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:74538400-74542400	Weak transcription	Left Ventricle	heart
9	chr15:74538400-74542800	Weak transcription	Brain Anterior Caudate	brain
10	chr15:74538400-74542800	Weak transcription	Brain Substantia Nigra	brain
11	chr15:74538400-74543200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:74538400-74543200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:74538400-74543200	Weak transcription	Spleen	Spleen
14	chr15:74538400-74543400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:74538600-74542600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:74538600-74542600	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:74538600-74542800	Weak transcription	Brain Angular Gyrus	brain
18	chr15:74538600-74542800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:74538600-74543000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:74538600-74543200	Weak transcription	Fetal Heart	heart
21	chr15:74538600-74544000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:74538800-74542200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr15:74538800-74545200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:74539000-74542800	Weak transcription	Brain Germinal Matrix	brain
25	chr15:74539200-74542400	Weak transcription	Fetal Brain Male	brain
26	chr15:74539200-74542800	Weak transcription	Fetal Brain Female	brain
27	chr15:74541000-74544600	Weak transcription	Lung	lung
28	chr15:74541200-74543800	Enhancers	Skeletal Muscle Female	skeletal muscle

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