Variant report

Variant	rs351170
Chromosome Location	chr15:74521454-74521455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11639316	0.84[JPT][hapmap]
rs11858661	0.80[CHB][hapmap];0.83[ASN][1000 genomes]
rs11858677	0.83[ASN][1000 genomes]
rs12901093	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16966903	0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2627305	0.83[ASN][1000 genomes]
rs351152	0.83[ASN][1000 genomes]
rs351154	0.83[ASN][1000 genomes]
rs351155	0.83[ASN][1000 genomes]
rs351159	0.95[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs351172	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs351175	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3843700	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3848164	0.80[ASN][1000 genomes]
rs61327819	0.83[ASN][1000 genomes]
rs62003670	0.83[ASN][1000 genomes]
rs6495091	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs748608	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs876703	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74512200-74522600	Enhancers	Fetal Brain Male	brain
2	chr15:74515400-74522400	Enhancers	Fetal Brain Female	brain
3	chr15:74519200-74521600	Enhancers	Colonic Mucosa	Colon
4	chr15:74519600-74521600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr15:74519800-74522600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr15:74520000-74524000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:74520200-74521600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:74520200-74521600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:74520200-74521600	Enhancers	Fetal Stomach	stomach
10	chr15:74520200-74522200	Enhancers	Brain Germinal Matrix	brain
11	chr15:74520200-74522200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr15:74520200-74522600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:74520400-74521600	Enhancers	Left Ventricle	heart
14	chr15:74520400-74521600	Enhancers	Ovary	ovary
15	chr15:74520400-74521600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr15:74520400-74521800	Enhancers	Fetal Lung	lung
17	chr15:74520400-74523200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:74520600-74521600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:74520600-74521600	Bivalent Enhancer	Placenta	Placenta
20	chr15:74520600-74523600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:74520800-74521600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr15:74520800-74521600	Enhancers	Lung	lung
23	chr15:74521200-74521600	Enhancers	Spleen	Spleen
24	chr15:74521200-74522200	Enhancers	Adipose Nuclei	Adipose
25	chr15:74521200-74522400	Enhancers	Fetal Muscle Leg	muscle
26	chr15:74521400-74521600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:74521400-74522400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
28	chr15:74521400-74522600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr15:74521400-74523200	Weak transcription	Right Atrium	heart
30	chr15:74521400-74525400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:74521400-74526400	Weak transcription	Stomach Mucosa	stomach
32	chr15:74521400-74528400	Weak transcription	Rectal Mucosa Donor 29	rectum

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