Variant report

Variant	rs12914182
Chromosome Location	chr15:57424454-57424455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57411738..57417145-chr15:57421254..57425802,5	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10518894	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10518895	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10518899	0.81[EUR][1000 genomes]
rs11071305	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11630195	0.85[AMR][1000 genomes]
rs11631228	0.83[AMR][1000 genomes]
rs11631541	0.84[AMR][1000 genomes]
rs11632069	0.82[AMR][1000 genomes]
rs11635645	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11636100	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11636201	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11636348	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11636919	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11852340	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11853331	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11855648	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12050751	0.81[EUR][1000 genomes]
rs12050758	0.81[EUR][1000 genomes]
rs12898327	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12898844	0.85[EUR][1000 genomes]
rs12899036	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12899187	0.83[AMR][1000 genomes]
rs12899588	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12899904	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12899915	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12900038	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12900589	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12900986	0.83[AMR][1000 genomes]
rs12901780	0.81[AMR][1000 genomes]
rs12903115	0.82[EUR][1000 genomes]
rs12903578	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12904321	0.81[EUR][1000 genomes]
rs12904501	0.81[EUR][1000 genomes]
rs12905900	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12906042	0.82[EUR][1000 genomes]
rs12906873	0.85[AMR][1000 genomes]
rs12906936	0.85[AMR][1000 genomes]
rs12908760	0.81[EUR][1000 genomes]
rs12909402	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12909811	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12910094	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12910170	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12910832	0.83[AMR][1000 genomes]
rs12911518	0.80[EUR][1000 genomes]
rs12912007	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12912210	0.83[AMR][1000 genomes]
rs12914410	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12914425	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12914481	0.82[EUR][1000 genomes]
rs12915473	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12916237	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12916478	0.80[EUR][1000 genomes]
rs12916958	0.83[AMR][1000 genomes]
rs12917247	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13313455	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1430823	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1462156	0.80[EUR][1000 genomes]
rs17239040	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1814585	0.81[EUR][1000 genomes]
rs2111891	0.81[AMR][1000 genomes]
rs2116065	0.83[AMR][1000 genomes]
rs2116066	0.83[AMR][1000 genomes]
rs2169465	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2169466	0.90[ASN][1000 genomes]
rs2414491	0.83[EUR][1000 genomes]
rs2414494	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2583108	0.80[EUR][1000 genomes]
rs2585087	0.82[AMR][1000 genomes]
rs2585102	0.81[EUR][1000 genomes]
rs2593237	0.81[EUR][1000 genomes]
rs2593238	0.81[EUR][1000 genomes]
rs2615231	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2733171	0.82[AMR][1000 genomes]
rs2733174	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2733176	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2733307	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28414972	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28514688	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28648502	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2957591	0.80[ASN][1000 genomes]
rs2962993	0.81[EUR][1000 genomes]
rs34262415	0.83[AMR][1000 genomes]
rs35646942	0.83[AMR][1000 genomes]
rs4774910	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62022986	0.83[AMR][1000 genomes]
rs62022988	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6493901	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7161965	0.81[EUR][1000 genomes]
rs7168387	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs745652	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8037901	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs967514	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12914182	TCF12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57386400-57426600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr15:57386600-57424600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:57387000-57430000	Weak transcription	Placenta	Placenta
4	chr15:57387200-57425400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:57387600-57442400	Weak transcription	Fetal Intestine Large	intestine
6	chr15:57399400-57424600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr15:57403000-57424600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:57403800-57425200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:57404600-57425000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:57406800-57425000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:57406800-57425400	Weak transcription	Pancreas	Pancrea
12	chr15:57406800-57425600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:57406800-57425600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr15:57406800-57426400	Weak transcription	Colonic Mucosa	Colon
15	chr15:57406800-57426600	Weak transcription	Psoas Muscle	Psoas
16	chr15:57407600-57425600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:57410400-57425400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:57410600-57424800	Weak transcription	HSMMtube	muscle
19	chr15:57410600-57425000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:57410600-57425400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:57410600-57426600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr15:57410600-57440800	Weak transcription	Ovary	ovary
23	chr15:57410800-57425000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:57410800-57425000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:57410800-57425600	Weak transcription	HMEC	breast
26	chr15:57411000-57428200	Weak transcription	NHLF	lung
27	chr15:57411000-57430400	Weak transcription	NH-A	brain
28	chr15:57411400-57426200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:57412400-57425000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:57412600-57424800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:57413600-57425400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr15:57413800-57426600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:57413800-57428800	Weak transcription	Gastric	stomach
34	chr15:57414000-57425400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr15:57414000-57425400	Weak transcription	Left Ventricle	heart
36	chr15:57414000-57425400	Weak transcription	Small Intestine	intestine
37	chr15:57415000-57425000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:57415000-57427800	Weak transcription	Colon Smooth Muscle	Colon
39	chr15:57415000-57428400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:57415000-57438800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr15:57415200-57425000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:57415200-57425600	Weak transcription	Aorta	Aorta
43	chr15:57415400-57425200	Weak transcription	NHDF-Ad	bronchial
44	chr15:57415400-57425200	Weak transcription	Osteobl	bone
45	chr15:57415400-57426800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr15:57415600-57424600	Weak transcription	HUVEC	blood vessel
47	chr15:57415600-57424800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:57415600-57438800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr15:57416000-57425000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:57416000-57438800	Weak transcription	Primary B cells from cord blood	blood

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